Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17155

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17145 and ABZR87_RS17150 are separated by 47 nucleotidesABZR87_RS17150 and ABZR87_RS17155 overlap by 4 nucleotidesABZR87_RS17155 and ABZR87_RS17160 are separated by 53 nucleotides ABZR87_RS17145: ABZR87_RS17145 - AMP nucleosidase, at 191,816 to 193,297 _RS17145 ABZR87_RS17150: ABZR87_RS17150 - ABC transporter permease subunit, at 193,345 to 194,118 _RS17150 ABZR87_RS17155: ABZR87_RS17155 - amino acid ABC transporter permease, at 194,115 to 194,825 _RS17155 ABZR87_RS17160: ABZR87_RS17160 - ABC transporter substrate-binding protein, at 194,879 to 195,766 _RS17160 Position (kb) 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 193.116 kb on + strand, within ABZR87_RS17145at 193.116 kb on + strand, within ABZR87_RS17145at 193.117 kb on - strand, within ABZR87_RS17145at 193.117 kb on - strand, within ABZR87_RS17145at 193.200 kb on + strandat 193.200 kb on + strandat 193.201 kb on - strandat 193.201 kb on - strandat 193.276 kb on + strandat 193.276 kb on + strandat 193.309 kb on + strandat 193.310 kb on - strandat 193.346 kb on + strandat 193.346 kb on + strandat 193.347 kb on - strandat 193.347 kb on - strandat 193.347 kb on - strandat 193.490 kb on + strand, within ABZR87_RS17150at 193.490 kb on + strand, within ABZR87_RS17150at 193.490 kb on + strand, within ABZR87_RS17150at 193.491 kb on - strand, within ABZR87_RS17150at 193.491 kb on - strand, within ABZR87_RS17150at 193.513 kb on + strand, within ABZR87_RS17150at 193.513 kb on + strand, within ABZR87_RS17150at 193.514 kb on - strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.882 kb on + strand, within ABZR87_RS17150at 194.084 kb on + strandat 194.085 kb on - strandat 194.085 kb on - strandat 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.282 kb on + strand, within ABZR87_RS17155at 194.283 kb on - strand, within ABZR87_RS17155at 194.284 kb on + strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.509 kb on + strand, within ABZR87_RS17155at 194.510 kb on - strand, within ABZR87_RS17155at 194.645 kb on - strand, within ABZR87_RS17155at 194.668 kb on - strand, within ABZR87_RS17155at 194.836 kb on + strandat 194.836 kb on + strandat 194.837 kb on - strandat 194.949 kb on + strandat 194.949 kb on + strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 195.048 kb on + strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.195 kb on + strand, within ABZR87_RS17160at 195.195 kb on + strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.215 kb on - strand, within ABZR87_RS17160at 195.220 kb on - strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.349 kb on - strand, within ABZR87_RS17160at 195.511 kb on - strand, within ABZR87_RS17160at 195.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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193,116 + ABZR87_RS17145 0.88 -1.6
193,116 + ABZR87_RS17145 0.88 +1.8
193,117 - ABZR87_RS17145 0.88 -0.1
193,117 - ABZR87_RS17145 0.88 -1.9
193,200 + -3.3
193,200 + -2.0
193,201 - +0.6
193,201 - -1.6
193,276 + -1.3
193,276 + -0.6
193,309 + +1.5
193,310 - +0.0
193,346 + +0.7
193,346 + +0.4
193,347 - -0.4
193,347 - -1.0
193,347 - +0.1
193,490 + ABZR87_RS17150 0.19 +0.4
193,490 + ABZR87_RS17150 0.19 -1.5
193,490 + ABZR87_RS17150 0.19 -1.8
193,491 - ABZR87_RS17150 0.19 -0.3
193,491 - ABZR87_RS17150 0.19 -0.1
193,513 + ABZR87_RS17150 0.22 -0.5
193,513 + ABZR87_RS17150 0.22 -0.1
193,514 - ABZR87_RS17150 0.22 -0.2
193,589 + ABZR87_RS17150 0.32 +0.9
193,589 + ABZR87_RS17150 0.32 +1.0
193,589 + ABZR87_RS17150 0.32 +0.1
193,589 + ABZR87_RS17150 0.32 +0.4
193,650 + ABZR87_RS17150 0.39 +1.2
193,650 + ABZR87_RS17150 0.39 +0.4
193,650 + ABZR87_RS17150 0.39 -0.4
193,651 - ABZR87_RS17150 0.40 -0.2
193,651 - ABZR87_RS17150 0.40 -0.3
193,651 - ABZR87_RS17150 0.40 -2.8
193,775 + ABZR87_RS17150 0.56 -1.7
193,775 + ABZR87_RS17150 0.56 +1.0
193,775 + ABZR87_RS17150 0.56 +0.4
193,775 + ABZR87_RS17150 0.56 -0.1
193,776 - ABZR87_RS17150 0.56 -1.4
193,776 - ABZR87_RS17150 0.56 +0.1
193,776 - ABZR87_RS17150 0.56 +0.9
193,860 - ABZR87_RS17150 0.67 +0.1
193,860 - ABZR87_RS17150 0.67 -0.8
193,860 - ABZR87_RS17150 0.67 -1.0
193,882 + ABZR87_RS17150 0.69 +0.1
194,084 + -0.2
194,085 - -0.3
194,085 - +0.7
194,215 + ABZR87_RS17155 0.14 -1.3
194,215 + ABZR87_RS17155 0.14 -0.2
194,215 + ABZR87_RS17155 0.14 +1.3
194,215 + ABZR87_RS17155 0.14 +0.3
194,215 + ABZR87_RS17155 0.14 -0.1
194,215 + ABZR87_RS17155 0.14 -0.1
194,215 + ABZR87_RS17155 0.14 +5.2
194,215 + ABZR87_RS17155 0.14 -0.3
194,216 - ABZR87_RS17155 0.14 +0.5
194,216 - ABZR87_RS17155 0.14 +0.2
194,216 - ABZR87_RS17155 0.14 -1.7
194,216 - ABZR87_RS17155 0.14 +0.5
194,282 + ABZR87_RS17155 0.23 +0.1
194,283 - ABZR87_RS17155 0.24 -0.6
194,284 + ABZR87_RS17155 0.24 +3.6
194,285 - ABZR87_RS17155 0.24 -0.4
194,285 - ABZR87_RS17155 0.24 +1.9
194,285 - ABZR87_RS17155 0.24 +0.5
194,285 - ABZR87_RS17155 0.24 -1.3
194,509 + ABZR87_RS17155 0.55 +0.6
194,510 - ABZR87_RS17155 0.56 +0.2
194,645 - ABZR87_RS17155 0.75 +1.3
194,668 - ABZR87_RS17155 0.78 +0.7
194,836 + +1.4
194,836 + -0.1
194,837 - +1.0
194,949 + +0.5
194,949 + +0.2
194,950 - -0.2
194,950 - +1.3
194,950 - +0.4
194,950 - -0.5
194,950 - -0.3
194,950 - +1.3
194,950 - +0.4
195,048 + ABZR87_RS17160 0.19 -1.0
195,049 - ABZR87_RS17160 0.19 -0.3
195,049 - ABZR87_RS17160 0.19 +0.7
195,049 - ABZR87_RS17160 0.19 -0.5
195,195 + ABZR87_RS17160 0.36 -0.1
195,195 + ABZR87_RS17160 0.36 -1.2
195,196 - ABZR87_RS17160 0.36 +1.9
195,196 - ABZR87_RS17160 0.36 +0.6
195,215 - ABZR87_RS17160 0.38 -0.9
195,220 - ABZR87_RS17160 0.38 -0.3
195,308 + ABZR87_RS17160 0.48 -0.0
195,308 + ABZR87_RS17160 0.48 -1.9
195,308 + ABZR87_RS17160 0.48 +2.4
195,308 + ABZR87_RS17160 0.48 +0.5
195,308 + ABZR87_RS17160 0.48 +0.6
195,308 + ABZR87_RS17160 0.48 -0.4
195,309 - ABZR87_RS17160 0.48 -0.0
195,309 - ABZR87_RS17160 0.48 +1.3
195,309 - ABZR87_RS17160 0.48 +3.0
195,309 - ABZR87_RS17160 0.48 +0.3
195,348 + ABZR87_RS17160 0.53 -1.0
195,348 + ABZR87_RS17160 0.53 +0.0
195,349 - ABZR87_RS17160 0.53 -1.2
195,511 - ABZR87_RS17160 0.71 +0.7
195,801 + -2.3

Or see this region's nucleotide sequence