Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17115 and ABZR87_RS17120 are separated by 97 nucleotides ABZR87_RS17120 and ABZR87_RS17125 are separated by 224 nucleotides ABZR87_RS17125 and ABZR87_RS17130 are separated by 19 nucleotides
ABZR87_RS17115: ABZR87_RS17115 - phytanoyl-CoA dioxygenase family protein, at 185,837 to 186,628
_RS17115
ABZR87_RS17120: ABZR87_RS17120 - hypothetical protein, at 186,726 to 186,947
_RS17120
ABZR87_RS17125: ABZR87_RS17125 - DUF2141 domain-containing protein, at 187,172 to 187,612
_RS17125
ABZR87_RS17130: ABZR87_RS17130 - carotenoid oxygenase family protein, at 187,632 to 189,158
_RS17130
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.263 kb on + strand, within ABZR87_RS17115 at 186.350 kb on - strand, within ABZR87_RS17115 at 186.442 kb on + strand, within ABZR87_RS17115 at 186.553 kb on + strand at 186.554 kb on - strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.558 kb on - strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.561 kb on - strand at 186.561 kb on - strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.946 kb on - strand at 186.946 kb on - strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.206 kb on + strand at 187.407 kb on - strand, within ABZR87_RS17125 at 187.430 kb on + strand, within ABZR87_RS17125 at 187.508 kb on + strand, within ABZR87_RS17125 at 187.893 kb on + strand, within ABZR87_RS17130 at 187.894 kb on - strand, within ABZR87_RS17130 at 187.932 kb on + strand, within ABZR87_RS17130 at 188.208 kb on + strand, within ABZR87_RS17130 at 188.209 kb on - strand, within ABZR87_RS17130 at 188.209 kb on - strand, within ABZR87_RS17130 at 188.304 kb on + strand, within ABZR87_RS17130 at 188.305 kb on - strand, within ABZR87_RS17130 at 188.427 kb on + strand, within ABZR87_RS17130 at 188.428 kb on - strand, within ABZR87_RS17130
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 186,263 + ABZR87_RS17115 0.54 -0.0 186,350 - ABZR87_RS17115 0.65 +0.5 186,442 + ABZR87_RS17115 0.76 +0.1 186,553 + -1.7 186,554 - +0.4 186,557 + +0.3 186,557 + -0.7 186,557 + -0.2 186,557 + +0.1 186,558 - -1.5 186,560 + +1.4 186,560 + -0.4 186,560 + -0.1 186,560 + -1.0 186,561 - +0.3 186,561 - +2.2 186,649 + -0.7 186,649 + +0.3 186,649 + -0.4 186,649 + -0.1 186,649 - -0.2 186,650 - -1.2 186,650 - +0.9 186,650 - +0.3 186,688 + +2.1 186,688 + -1.2 186,688 + -0.5 186,689 - +0.4 186,689 - +0.8 186,689 - +0.4 186,689 - +1.1 186,945 + +1.2 186,945 + -0.2 186,945 + -0.5 186,945 + +0.5 186,945 + -1.2 186,946 - +2.0 186,946 - +1.1 187,115 + +1.5 187,115 + +0.1 187,115 + +0.6 187,116 - +0.9 187,116 - -0.7 187,116 - -1.0 187,116 - -0.3 187,116 - -0.8 187,206 + -0.0 187,407 - ABZR87_RS17125 0.53 -2.7 187,430 + ABZR87_RS17125 0.59 -0.6 187,508 + ABZR87_RS17125 0.76 -1.3 187,893 + ABZR87_RS17130 0.17 -1.3 187,894 - ABZR87_RS17130 0.17 -0.7 187,932 + ABZR87_RS17130 0.20 -0.5 188,208 + ABZR87_RS17130 0.38 +0.9 188,209 - ABZR87_RS17130 0.38 +0.8 188,209 - ABZR87_RS17130 0.38 -1.9 188,304 + ABZR87_RS17130 0.44 -1.3 188,305 - ABZR87_RS17130 0.44 +0.1 188,427 + ABZR87_RS17130 0.52 +1.3 188,428 - ABZR87_RS17130 0.52 +0.5
Or see this region's nucleotide sequence