Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16900 and ABZR87_RS16905 are separated by 18 nucleotides ABZR87_RS16905 and ABZR87_RS16910 are separated by 110 nucleotides ABZR87_RS16910 and ABZR87_RS16915 are separated by 197 nucleotides
ABZR87_RS16900: ABZR87_RS16900 - EAL domain-containing protein, at 147,539 to 149,710
_RS16900
ABZR87_RS16905: ABZR87_RS16905 - hypothetical protein, at 149,729 to 150,361
_RS16905
ABZR87_RS16910: ABZR87_RS16910 - hypothetical protein, at 150,472 to 150,990
_RS16910
ABZR87_RS16915: ABZR87_RS16915 - ABC transporter substrate-binding protein, at 151,188 to 152,291
_RS16915
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.772 kb on + strand, within ABZR87_RS16900 at 148.773 kb on - strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.127 kb on + strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.128 kb on - strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.410 kb on + strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.411 kb on - strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.423 kb on + strand, within ABZR87_RS16900 at 149.424 kb on - strand, within ABZR87_RS16900 at 149.624 kb on + strand at 149.625 kb on - strand at 149.793 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 149.922 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.102 kb on + strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.103 kb on - strand, within ABZR87_RS16905 at 150.159 kb on + strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.160 kb on - strand, within ABZR87_RS16905 at 150.411 kb on + strand at 150.411 kb on + strand at 150.412 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.458 kb on + strand at 150.459 kb on - strand at 150.473 kb on + strand at 150.474 kb on - strand at 150.566 kb on + strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.567 kb on - strand, within ABZR87_RS16910 at 150.743 kb on + strand, within ABZR87_RS16910 at 150.743 kb on + strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.744 kb on - strand, within ABZR87_RS16910 at 150.872 kb on + strand, within ABZR87_RS16910 at 150.873 kb on - strand, within ABZR87_RS16910 at 150.911 kb on + strand, within ABZR87_RS16910 at 150.912 kb on - strand, within ABZR87_RS16910 at 150.983 kb on + strand at 150.983 kb on + strand at 150.983 kb on + strand at 150.983 kb on + strand at 150.984 kb on - strand at 150.984 kb on - strand at 151.036 kb on + strand at 151.036 kb on + strand at 151.036 kb on + strand at 151.037 kb on - strand at 151.230 kb on + strand at 151.231 kb on - strand at 151.234 kb on + strand at 151.234 kb on + strand at 151.235 kb on - strand at 151.235 kb on - strand at 151.265 kb on - strand at 151.265 kb on - strand at 151.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 148,772 + ABZR87_RS16900 0.57 +2.6 148,772 + ABZR87_RS16900 0.57 +0.1 148,773 - ABZR87_RS16900 0.57 +0.8 149,127 + ABZR87_RS16900 0.73 +0.6 149,127 + ABZR87_RS16900 0.73 -0.2 149,128 - ABZR87_RS16900 0.73 +0.0 149,128 - ABZR87_RS16900 0.73 -0.9 149,410 + ABZR87_RS16900 0.86 -0.1 149,410 + ABZR87_RS16900 0.86 -0.1 149,410 + ABZR87_RS16900 0.86 -1.2 149,410 + ABZR87_RS16900 0.86 +0.4 149,410 + ABZR87_RS16900 0.86 -2.3 149,410 + ABZR87_RS16900 0.86 -2.3 149,410 + ABZR87_RS16900 0.86 +1.1 149,410 + ABZR87_RS16900 0.86 -0.3 149,410 + ABZR87_RS16900 0.86 +0.4 149,411 - ABZR87_RS16900 0.86 -2.6 149,411 - ABZR87_RS16900 0.86 -0.1 149,423 + ABZR87_RS16900 0.87 +1.4 149,423 + ABZR87_RS16900 0.87 +0.6 149,424 - ABZR87_RS16900 0.87 -1.6 149,624 + +0.9 149,625 - +0.4 149,793 + ABZR87_RS16905 0.10 +1.1 149,922 + ABZR87_RS16905 0.30 -0.3 149,922 + ABZR87_RS16905 0.30 +0.3 150,102 + ABZR87_RS16905 0.59 +1.4 150,102 + ABZR87_RS16905 0.59 -0.3 150,103 - ABZR87_RS16905 0.59 -0.7 150,103 - ABZR87_RS16905 0.59 +1.3 150,159 + ABZR87_RS16905 0.68 +0.5 150,160 - ABZR87_RS16905 0.68 +0.2 150,160 - ABZR87_RS16905 0.68 -1.8 150,160 - ABZR87_RS16905 0.68 -1.0 150,160 - ABZR87_RS16905 0.68 +0.2 150,411 + +1.4 150,411 + +0.1 150,412 + +0.9 150,458 + -0.4 150,458 + +1.1 150,458 + -0.2 150,459 - +0.3 150,473 + -0.4 150,474 - +0.1 150,566 + ABZR87_RS16910 0.18 -0.0 150,567 - ABZR87_RS16910 0.18 +0.8 150,567 - ABZR87_RS16910 0.18 +0.4 150,743 + ABZR87_RS16910 0.52 -0.0 150,743 + ABZR87_RS16910 0.52 -1.2 150,744 - ABZR87_RS16910 0.52 -0.2 150,744 - ABZR87_RS16910 0.52 +0.7 150,744 - ABZR87_RS16910 0.52 -0.5 150,872 + ABZR87_RS16910 0.77 -1.5 150,873 - ABZR87_RS16910 0.77 -0.3 150,911 + ABZR87_RS16910 0.85 +1.5 150,912 - ABZR87_RS16910 0.85 -0.1 150,983 + -0.7 150,983 + -0.5 150,983 + -0.2 150,983 + -0.8 150,984 - -0.5 150,984 - +0.7 151,036 + +0.5 151,036 + -2.1 151,036 + -1.5 151,037 - -1.3 151,230 + +0.2 151,231 - +0.5 151,234 + -1.3 151,234 + -1.6 151,235 - -0.7 151,235 - +0.4 151,265 - +1.5 151,265 - -2.3 151,265 - +0.6
Or see this region's nucleotide sequence