Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16515

Experiment: rhizosphere sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16505 and ABZR87_RS16510 are separated by 103 nucleotidesABZR87_RS16510 and ABZR87_RS16515 are separated by 110 nucleotidesABZR87_RS16515 and ABZR87_RS16520 are separated by 97 nucleotidesABZR87_RS16520 and ABZR87_RS16525 are separated by 27 nucleotides ABZR87_RS16505: ABZR87_RS16505 - hypothetical protein, at 54,391 to 54,744 _RS16505 ABZR87_RS16510: ABZR87_RS16510 - DUF2076 family protein, at 54,848 to 55,573 _RS16510 ABZR87_RS16515: ABZR87_RS16515 - helix-turn-helix domain-containing protein, at 55,684 to 56,655 _RS16515 ABZR87_RS16520: ABZR87_RS16520 - tautomerase family protein, at 56,753 to 57,205 _RS16520 ABZR87_RS16525: ABZR87_RS16525 - dienelactone hydrolase family protein, at 57,233 to 58,048 _RS16525 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.731 kb on - strandat 54.732 kb on + strandat 54.732 kb on + strandat 54.743 kb on - strandat 54.850 kb on - strandat 54.850 kb on - strandat 54.850 kb on - strandat 54.876 kb on + strandat 54.944 kb on - strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.987 kb on + strand, within ABZR87_RS16510at 54.988 kb on - strand, within ABZR87_RS16510at 54.988 kb on - strand, within ABZR87_RS16510at 54.990 kb on + strand, within ABZR87_RS16510at 54.990 kb on + strand, within ABZR87_RS16510at 55.100 kb on + strand, within ABZR87_RS16510at 55.100 kb on + strand, within ABZR87_RS16510at 55.101 kb on - strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.269 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.336 kb on + strand, within ABZR87_RS16510at 55.337 kb on - strand, within ABZR87_RS16510at 55.444 kb on - strand, within ABZR87_RS16510at 55.444 kb on - strand, within ABZR87_RS16510at 55.614 kb on + strandat 55.614 kb on + strandat 55.614 kb on + strandat 55.615 kb on - strandat 55.672 kb on - strandat 55.686 kb on - strandat 55.764 kb on - strandat 55.764 kb on - strandat 55.764 kb on - strandat 55.768 kb on + strandat 56.293 kb on + strand, within ABZR87_RS16515at 56.417 kb on - strand, within ABZR87_RS16515at 56.417 kb on - strand, within ABZR87_RS16515at 56.618 kb on + strandat 56.632 kb on + strandat 56.632 kb on + strandat 56.633 kb on - strandat 57.320 kb on + strand, within ABZR87_RS16525at 57.320 kb on + strand, within ABZR87_RS16525at 57.320 kb on + strand, within ABZR87_RS16525at 57.320 kb on + strand, within ABZR87_RS16525at 57.320 kb on + strand, within ABZR87_RS16525at 57.321 kb on - strand, within ABZR87_RS16525at 57.321 kb on - strand, within ABZR87_RS16525at 57.321 kb on - strand, within ABZR87_RS16525at 57.321 kb on - strand, within ABZR87_RS16525at 57.345 kb on + strand, within ABZR87_RS16525at 57.345 kb on + strand, within ABZR87_RS16525at 57.428 kb on + strand, within ABZR87_RS16525at 57.428 kb on + strand, within ABZR87_RS16525at 57.428 kb on + strand, within ABZR87_RS16525at 57.428 kb on + strand, within ABZR87_RS16525at 57.428 kb on + strand, within ABZR87_RS16525at 57.429 kb on - strand, within ABZR87_RS16525at 57.429 kb on - strand, within ABZR87_RS16525at 57.429 kb on - strand, within ABZR87_RS16525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
remove
54,731 - +0.9
54,732 + +2.9
54,732 + +0.9
54,743 - -1.7
54,850 - +1.0
54,850 - -0.1
54,850 - -0.1
54,876 + -0.9
54,944 - ABZR87_RS16510 0.13 -0.1
54,987 + ABZR87_RS16510 0.19 -0.1
54,987 + ABZR87_RS16510 0.19 +0.7
54,987 + ABZR87_RS16510 0.19 +0.2
54,987 + ABZR87_RS16510 0.19 -1.1
54,988 - ABZR87_RS16510 0.19 -1.0
54,988 - ABZR87_RS16510 0.19 -0.1
54,990 + ABZR87_RS16510 0.20 +0.2
54,990 + ABZR87_RS16510 0.20 -0.6
55,100 + ABZR87_RS16510 0.35 -0.2
55,100 + ABZR87_RS16510 0.35 -0.4
55,101 - ABZR87_RS16510 0.35 +1.1
55,269 + ABZR87_RS16510 0.58 +0.3
55,269 + ABZR87_RS16510 0.58 -0.1
55,269 + ABZR87_RS16510 0.58 -0.2
55,269 + ABZR87_RS16510 0.58 +0.1
55,336 + ABZR87_RS16510 0.67 -0.6
55,336 + ABZR87_RS16510 0.67 -1.1
55,336 + ABZR87_RS16510 0.67 +0.7
55,337 - ABZR87_RS16510 0.67 +0.3
55,444 - ABZR87_RS16510 0.82 -1.0
55,444 - ABZR87_RS16510 0.82 -0.8
55,614 + +0.4
55,614 + -1.9
55,614 + -1.1
55,615 - -0.9
55,672 - +0.2
55,686 - -0.2
55,764 - -0.5
55,764 - +0.9
55,764 - -0.3
55,768 + -0.5
56,293 + ABZR87_RS16515 0.63 +0.6
56,417 - ABZR87_RS16515 0.75 -1.6
56,417 - ABZR87_RS16515 0.75 -2.5
56,618 + -0.7
56,632 + +1.6
56,632 + -0.4
56,633 - +0.2
57,320 + ABZR87_RS16525 0.11 -0.8
57,320 + ABZR87_RS16525 0.11 -0.9
57,320 + ABZR87_RS16525 0.11 -0.0
57,320 + ABZR87_RS16525 0.11 -0.3
57,320 + ABZR87_RS16525 0.11 +0.2
57,321 - ABZR87_RS16525 0.11 -1.7
57,321 - ABZR87_RS16525 0.11 +0.4
57,321 - ABZR87_RS16525 0.11 +2.2
57,321 - ABZR87_RS16525 0.11 -0.2
57,345 + ABZR87_RS16525 0.14 -0.0
57,345 + ABZR87_RS16525 0.14 -2.5
57,428 + ABZR87_RS16525 0.24 -0.3
57,428 + ABZR87_RS16525 0.24 +0.6
57,428 + ABZR87_RS16525 0.24 -0.5
57,428 + ABZR87_RS16525 0.24 +0.8
57,428 + ABZR87_RS16525 0.24 -0.4
57,429 - ABZR87_RS16525 0.24 +0.2
57,429 - ABZR87_RS16525 0.24 -0.4
57,429 - ABZR87_RS16525 0.24 -0.9

Or see this region's nucleotide sequence