Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13075

Experiment: rhizosphere sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 2; outgrowth in LB
2,775,029	+		ABZR87_RS13070	0.50	+0.4
2,775,029	+		ABZR87_RS13070	0.50	+0.5
2,775,030	-		ABZR87_RS13070	0.50	-0.5
2,775,136	-		ABZR87_RS13070	0.56	-2.2
2,775,139	+		ABZR87_RS13070	0.57	-0.9
2,775,139	+		ABZR87_RS13070	0.57	+0.4
2,775,139	+		ABZR87_RS13070	0.57	+2.3
2,775,139	+		ABZR87_RS13070	0.57	-0.8
2,775,140	-		ABZR87_RS13070	0.57	-0.6
2,775,140	-		ABZR87_RS13070	0.57	-0.5
2,775,140	-		ABZR87_RS13070	0.57	-0.2
2,775,169	+		ABZR87_RS13070	0.58	+0.2
2,775,169	+		ABZR87_RS13070	0.58	+0.5
2,775,169	+		ABZR87_RS13070	0.58	-0.2
2,775,170	-		ABZR87_RS13070	0.58	-2.3
2,775,178	-		ABZR87_RS13070	0.59	+2.3
2,775,236	+		ABZR87_RS13070	0.62	+0.6
2,775,236	+		ABZR87_RS13070	0.62	-0.1
2,775,237	-		ABZR87_RS13070	0.62	+0.8
2,775,237	-		ABZR87_RS13070	0.62	-0.1
2,775,237	-		ABZR87_RS13070	0.62	-0.1
2,775,259	+		ABZR87_RS13070	0.64	+0.6
2,775,259	+		ABZR87_RS13070	0.64	-0.3
2,775,260	-		ABZR87_RS13070	0.64	-1.3
2,775,260	-		ABZR87_RS13070	0.64	-1.9
2,775,260	-		ABZR87_RS13070	0.64	+0.5
2,775,260	-		ABZR87_RS13070	0.64	-0.4
2,775,280	-		ABZR87_RS13070	0.65	-1.3
2,775,325	+		ABZR87_RS13070	0.68	+0.0
2,775,325	+		ABZR87_RS13070	0.68	-0.3
2,775,325	+		ABZR87_RS13070	0.68	+0.4
2,775,325	+		ABZR87_RS13070	0.68	-0.3
2,775,326	-		ABZR87_RS13070	0.68	+0.4
2,775,326	-		ABZR87_RS13070	0.68	-2.2
2,775,326	-		ABZR87_RS13070	0.68	-0.7
2,775,360	+		ABZR87_RS13070	0.70	+1.6
2,775,361	-		ABZR87_RS13070	0.70	-1.2
2,775,361	-		ABZR87_RS13070	0.70	-0.4
2,775,368	-		ABZR87_RS13070	0.70	-0.2
2,775,383	-		ABZR87_RS13070	0.71	+2.0
2,775,397	-		ABZR87_RS13070	0.72	-0.2
2,775,478	+		ABZR87_RS13070	0.77	-1.6
2,775,478	+		ABZR87_RS13070	0.77	+0.3
2,775,501	+		ABZR87_RS13070	0.78	+1.0
2,775,502	-		ABZR87_RS13070	0.78	-2.2
2,775,509	-		ABZR87_RS13070	0.79	-0.7
2,775,509	-		ABZR87_RS13070	0.79	-0.1
2,775,509	-		ABZR87_RS13070	0.79	-0.4
2,775,590	+		ABZR87_RS13070	0.84	+0.3
2,775,603	-		ABZR87_RS13070	0.84	-0.1
2,775,603	-		ABZR87_RS13070	0.84	-0.4
2,775,615	+		ABZR87_RS13070	0.85	-0.2
2,775,615	+		ABZR87_RS13070	0.85	+0.2
2,775,741	+				-1.5
2,775,742	-				+0.3
2,775,753	+				-0.8
2,775,753	+				-0.1
2,775,753	+				-0.1
2,775,754	-				-1.3
2,775,782	-				-0.5
2,775,808	-				-0.6
2,775,865	+				-1.2
2,775,866	-				+0.9
2,775,866	-				+0.3
2,775,888	+				+1.8
2,775,889	-				+0.3
2,775,889	-				-1.2
2,775,889	-				+0.3
2,775,947	+				+0.1
2,775,947	+				-1.1
2,775,947	+				-1.5
2,775,948	-				-0.0
2,775,948	-				+1.1
2,775,948	-				+1.0
2,775,989	+				-1.6
2,775,989	+				-0.6
2,775,989	+				-0.2
2,775,989	+				+2.6
2,775,989	+				-0.0
2,775,989	+				-1.7
2,775,990	-				-0.5
2,775,990	-				-2.6
2,775,990	-				+0.5
2,776,030	+				-0.6
2,776,030	+				-1.1
2,776,030	+				+0.1
2,776,030	+				+2.0
2,776,031	-				-0.2
2,776,075	+				+0.7
2,776,075	+				+0.3
2,776,075	+				+3.1
2,776,076	-				+0.6
2,776,076	-				-0.3
2,776,110	+		ABZR87_RS13075	0.17	-0.1
2,776,110	+		ABZR87_RS13075	0.17	-1.8
2,776,111	-		ABZR87_RS13075	0.17	-0.1
2,776,111	-		ABZR87_RS13075	0.17	+1.9
2,776,123	-		ABZR87_RS13075	0.19	-0.3
2,776,156	+		ABZR87_RS13075	0.26	-1.0
2,776,156	+		ABZR87_RS13075	0.26	-0.7
2,776,156	+		ABZR87_RS13075	0.26	-0.3
2,776,157	-		ABZR87_RS13075	0.26	+2.4
2,776,157	-		ABZR87_RS13075	0.26	-1.6
2,776,157	-		ABZR87_RS13075	0.26	-0.7
2,776,215	+		ABZR87_RS13075	0.38	-1.4
2,776,215	+		ABZR87_RS13075	0.38	+1.1
2,776,216	-		ABZR87_RS13075	0.38	-0.8
2,776,216	-		ABZR87_RS13075	0.38	+0.7
2,776,259	+		ABZR87_RS13075	0.47	-1.4
2,776,259	+		ABZR87_RS13075	0.47	-2.2
2,776,259	+		ABZR87_RS13075	0.47	-0.1
2,776,260	-		ABZR87_RS13075	0.48	+0.7
2,776,274	+		ABZR87_RS13075	0.50	-0.1
2,776,410	+		ABZR87_RS13075	0.78	-2.7
2,776,410	+		ABZR87_RS13075	0.78	-1.0
2,776,410	+		ABZR87_RS13075	0.78	+0.6
2,776,411	-		ABZR87_RS13075	0.79	-1.8
2,776,411	-		ABZR87_RS13075	0.79	+0.8
2,776,411	-		ABZR87_RS13075	0.79	+1.2
2,776,466	-				+0.7
2,776,466	-				+0.3
2,776,498	+				-0.4
2,776,498	+				+0.3
2,776,498	+				-0.6
2,776,499	-				+0.2
2,776,508	+				-2.1
2,776,508	+				-1.4
2,776,508	+				-0.1
2,776,552	-				+2.9
2,776,602	+		ABZR87_RS13080	0.19	-1.3
2,776,632	+		ABZR87_RS13080	0.25	-0.2
2,776,632	+		ABZR87_RS13080	0.25	-0.1
2,776,632	+		ABZR87_RS13080	0.25	+1.2
2,776,633	-		ABZR87_RS13080	0.25	+0.2
2,776,633	-		ABZR87_RS13080	0.25	+1.5
2,776,633	-		ABZR87_RS13080	0.25	-0.4
2,776,633	-		ABZR87_RS13080	0.25	+0.7
2,776,644	+		ABZR87_RS13080	0.28	-1.2
2,776,644	+		ABZR87_RS13080	0.28	-0.7
2,776,645	-		ABZR87_RS13080	0.28	+0.9
2,776,724	+		ABZR87_RS13080	0.44	-0.9
2,776,724	+		ABZR87_RS13080	0.44	+1.0
2,776,725	-		ABZR87_RS13080	0.44	+0.5
2,776,725	-		ABZR87_RS13080	0.44	-0.7
2,776,762	+		ABZR87_RS13080	0.52	-0.4
2,776,763	-		ABZR87_RS13080	0.52	-1.5
2,776,763	-		ABZR87_RS13080	0.52	+0.4
2,776,763	-		ABZR87_RS13080	0.52	-0.1
2,776,763	-		ABZR87_RS13080	0.52	+0.1
2,776,763	-		ABZR87_RS13080	0.52	+1.1
2,776,773	+		ABZR87_RS13080	0.54	+0.1
2,776,773	+		ABZR87_RS13080	0.54	-1.8
2,776,774	-		ABZR87_RS13080	0.54	-1.7
2,776,786	+		ABZR87_RS13080	0.57	-0.2
2,776,827	+		ABZR87_RS13080	0.65	-0.2
2,776,827	+		ABZR87_RS13080	0.65	-1.0
2,776,827	+		ABZR87_RS13080	0.65	-0.9
2,776,828	-		ABZR87_RS13080	0.66	+2.2
2,776,860	-		ABZR87_RS13080	0.72	-0.1
2,776,918	+		ABZR87_RS13080	0.84	-1.9
2,776,919	-		ABZR87_RS13080	0.84	-1.1
2,776,919	-		ABZR87_RS13080	0.84	-0.7
2,776,919	-		ABZR87_RS13080	0.84	+0.5
2,776,919	-		ABZR87_RS13080	0.84	+0.3
2,776,952	+				+0.3
2,776,952	+				-0.8
2,776,952	+				-0.1
2,776,953	-				+0.7
2,776,953	-				-0.5
2,776,953	-				+0.7
2,776,953	-				+0.5
2,777,002	+				-1.7
2,777,002	+				+0.1
2,777,002	+				-0.6
2,777,003	-				+0.6
2,777,003	-				-0.5
2,777,033	+				-0.1
2,777,033	+				-0.1
2,777,033	+				+0.2
2,777,033	+				-1.3
2,777,033	+				-0.5
2,777,033	+				+0.2
2,777,034	-				-1.2
2,777,034	-				+0.6
2,777,036	+				+0.6
2,777,036	+				+0.6
2,777,036	+				-0.0
2,777,036	+				+0.3
2,777,037	-				-0.1
2,777,037	-				+0.7
2,777,050	-				+0.2
2,777,146	-				-1.0
2,777,146	-				-1.2
2,777,146	-				-2.1
2,777,146	-				+4.5
2,777,147	+				+1.2
2,777,147	+				+0.6
2,777,147	+				+2.7
2,777,147	+				+0.8
2,777,147	+				-3.0
2,777,165	-				-0.4
2,777,172	+				-0.4
2,777,173	-				-0.8
2,777,173	-				+0.0
2,777,173	-				+0.1
2,777,219	-				+1.2
2,777,219	-				-1.7
2,777,219	-				+0.1
2,777,219	-				-0.9
2,777,260	+				+0.9
2,777,260	+				-0.4
2,777,260	+				+0.4
2,777,260	+				-1.4
2,777,261	-				+1.5
2,777,261	-				+0.6
2,777,261	-				+0.8
2,777,319	+				-0.3
2,777,320	-				-1.1
2,777,355	+				+2.1
2,777,355	+				+0.1
2,777,355	+				+1.0
2,777,356	-				-1.4
2,777,356	-				-0.8
2,777,356	-				+0.8
2,777,356	-				-1.7
2,777,359	+				-0.8
2,777,359	+				-0.5
2,777,359	+				+0.9
2,777,359	+				+0.4
2,777,359	+				+0.9
2,777,359	+				+0.9
2,777,360	-				+0.3
2,777,360	-				-0.8
2,777,360	-				-0.3
2,777,435	+		ABZR87_RS13085	0.13	+0.1
2,777,435	+		ABZR87_RS13085	0.13	-0.6
2,777,435	+		ABZR87_RS13085	0.13	-0.5
2,777,435	+		ABZR87_RS13085	0.13	-1.0
2,777,436	-		ABZR87_RS13085	0.13	-0.1
2,777,436	-		ABZR87_RS13085	0.13	+1.0