Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08325

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08320 and ABZR87_RS08325 are separated by 176 nucleotidesABZR87_RS08325 and ABZR87_RS08330 are separated by 290 nucleotides ABZR87_RS08320: ABZR87_RS08320 - hypothetical protein, at 1,768,011 to 1,768,922 _RS08320 ABZR87_RS08325: ABZR87_RS08325 - SDR family oxidoreductase, at 1,769,099 to 1,770,031 _RS08325 ABZR87_RS08330: ABZR87_RS08330 - isocitrate lyase, at 1,770,322 to 1,771,908 _RS08330 Position (kb) 1769 1770 1771Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1768.406 kb on - strand, within ABZR87_RS08320at 1768.485 kb on + strand, within ABZR87_RS08320at 1768.485 kb on + strand, within ABZR87_RS08320at 1768.486 kb on - strand, within ABZR87_RS08320at 1768.588 kb on + strand, within ABZR87_RS08320at 1768.618 kb on + strand, within ABZR87_RS08320at 1768.717 kb on + strand, within ABZR87_RS08320at 1768.717 kb on + strand, within ABZR87_RS08320at 1768.855 kb on + strandat 1768.856 kb on - strandat 1768.856 kb on - strandat 1768.856 kb on - strandat 1768.907 kb on + strandat 1768.908 kb on - strandat 1768.908 kb on - strandat 1768.928 kb on + strandat 1768.972 kb on + strandat 1768.972 kb on + strandat 1769.034 kb on - strandat 1769.051 kb on + strandat 1769.109 kb on + strandat 1769.109 kb on + strandat 1769.110 kb on - strandat 1769.110 kb on - strandat 1769.155 kb on - strandat 1769.155 kb on - strandat 1769.155 kb on - strandat 1769.252 kb on - strand, within ABZR87_RS08325at 1769.252 kb on - strand, within ABZR87_RS08325at 1769.252 kb on - strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.291 kb on + strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.292 kb on - strand, within ABZR87_RS08325at 1769.399 kb on + strand, within ABZR87_RS08325at 1769.399 kb on + strand, within ABZR87_RS08325at 1769.400 kb on - strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.414 kb on + strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.415 kb on - strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.416 kb on + strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.417 kb on - strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.420 kb on + strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.421 kb on - strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.570 kb on + strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.571 kb on - strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.780 kb on + strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.781 kb on - strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.831 kb on + strand, within ABZR87_RS08325at 1769.832 kb on - strand, within ABZR87_RS08325at 1769.915 kb on + strand, within ABZR87_RS08325at 1769.985 kb on - strandat 1770.030 kb on - strandat 1770.030 kb on - strandat 1770.157 kb on + strandat 1770.169 kb on - strandat 1770.169 kb on - strandat 1770.172 kb on + strandat 1770.233 kb on + strandat 1770.234 kb on - strandat 1770.238 kb on + strandat 1770.238 kb on + strandat 1770.238 kb on + strandat 1770.238 kb on + strandat 1770.238 kb on + strandat 1770.239 kb on - strandat 1770.239 kb on - strandat 1770.239 kb on - strandat 1770.239 kb on - strandat 1770.268 kb on - strandat 1770.268 kb on - strandat 1770.304 kb on + strandat 1770.304 kb on + strandat 1770.304 kb on + strandat 1770.305 kb on - strandat 1770.331 kb on + strandat 1770.332 kb on - strandat 1770.463 kb on + strandat 1770.464 kb on - strandat 1770.464 kb on - strandat 1770.500 kb on - strand, within ABZR87_RS08330at 1770.521 kb on - strand, within ABZR87_RS08330at 1770.521 kb on - strand, within ABZR87_RS08330at 1770.521 kb on - strand, within ABZR87_RS08330at 1770.610 kb on + strand, within ABZR87_RS08330at 1770.616 kb on + strand, within ABZR87_RS08330at 1770.616 kb on + strand, within ABZR87_RS08330at 1770.616 kb on + strand, within ABZR87_RS08330at 1770.616 kb on + strand, within ABZR87_RS08330at 1770.616 kb on + strand, within ABZR87_RS08330at 1770.617 kb on - strand, within ABZR87_RS08330at 1770.617 kb on - strand, within ABZR87_RS08330at 1770.721 kb on + strand, within ABZR87_RS08330at 1770.721 kb on + strand, within ABZR87_RS08330at 1770.721 kb on + strand, within ABZR87_RS08330at 1770.721 kb on + strand, within ABZR87_RS08330at 1770.721 kb on + strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.722 kb on - strand, within ABZR87_RS08330at 1770.898 kb on + strand, within ABZR87_RS08330at 1770.898 kb on + strand, within ABZR87_RS08330at 1770.898 kb on + strand, within ABZR87_RS08330at 1770.899 kb on - strand, within ABZR87_RS08330at 1770.899 kb on - strand, within ABZR87_RS08330at 1770.899 kb on - strand, within ABZR87_RS08330at 1770.899 kb on - strand, within ABZR87_RS08330at 1770.899 kb on - strand, within ABZR87_RS08330

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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1,768,406 - ABZR87_RS08320 0.43 +1.0
1,768,485 + ABZR87_RS08320 0.52 -0.9
1,768,485 + ABZR87_RS08320 0.52 +0.1
1,768,486 - ABZR87_RS08320 0.52 -0.9
1,768,588 + ABZR87_RS08320 0.63 +0.3
1,768,618 + ABZR87_RS08320 0.67 +2.1
1,768,717 + ABZR87_RS08320 0.77 +0.4
1,768,717 + ABZR87_RS08320 0.77 -1.0
1,768,855 + +0.3
1,768,856 - -0.6
1,768,856 - -0.3
1,768,856 - +0.3
1,768,907 + -0.2
1,768,908 - +0.1
1,768,908 - -0.2
1,768,928 + +0.1
1,768,972 + +0.8
1,768,972 + -0.3
1,769,034 - -0.4
1,769,051 + +0.4
1,769,109 + +1.1
1,769,109 + -1.1
1,769,110 - -0.0
1,769,110 - -1.5
1,769,155 - +0.1
1,769,155 - -0.9
1,769,155 - +0.2
1,769,252 - ABZR87_RS08325 0.16 -0.7
1,769,252 - ABZR87_RS08325 0.16 +1.5
1,769,252 - ABZR87_RS08325 0.16 +0.8
1,769,291 + ABZR87_RS08325 0.21 -1.4
1,769,291 + ABZR87_RS08325 0.21 +0.5
1,769,291 + ABZR87_RS08325 0.21 -0.5
1,769,291 + ABZR87_RS08325 0.21 +0.0
1,769,291 + ABZR87_RS08325 0.21 +0.5
1,769,291 + ABZR87_RS08325 0.21 -0.4
1,769,292 - ABZR87_RS08325 0.21 +2.2
1,769,292 - ABZR87_RS08325 0.21 +0.5
1,769,292 - ABZR87_RS08325 0.21 -0.1
1,769,292 - ABZR87_RS08325 0.21 -0.7
1,769,399 + ABZR87_RS08325 0.32 -0.1
1,769,399 + ABZR87_RS08325 0.32 -1.5
1,769,400 - ABZR87_RS08325 0.32 -0.5
1,769,414 + ABZR87_RS08325 0.34 -1.2
1,769,414 + ABZR87_RS08325 0.34 -1.0
1,769,414 + ABZR87_RS08325 0.34 -0.3
1,769,414 + ABZR87_RS08325 0.34 -2.7
1,769,414 + ABZR87_RS08325 0.34 -0.3
1,769,414 + ABZR87_RS08325 0.34 +2.2
1,769,414 + ABZR87_RS08325 0.34 -0.1
1,769,414 + ABZR87_RS08325 0.34 -0.1
1,769,414 + ABZR87_RS08325 0.34 -0.8
1,769,414 + ABZR87_RS08325 0.34 -0.3
1,769,414 + ABZR87_RS08325 0.34 -0.4
1,769,414 + ABZR87_RS08325 0.34 -0.4
1,769,414 + ABZR87_RS08325 0.34 -0.4
1,769,414 + ABZR87_RS08325 0.34 -0.2
1,769,414 + ABZR87_RS08325 0.34 -0.6
1,769,414 + ABZR87_RS08325 0.34 +1.1
1,769,415 - ABZR87_RS08325 0.34 +0.2
1,769,415 - ABZR87_RS08325 0.34 +0.5
1,769,415 - ABZR87_RS08325 0.34 +0.8
1,769,415 - ABZR87_RS08325 0.34 +0.3
1,769,415 - ABZR87_RS08325 0.34 +1.5
1,769,415 - ABZR87_RS08325 0.34 +0.1
1,769,415 - ABZR87_RS08325 0.34 -0.3
1,769,415 - ABZR87_RS08325 0.34 +0.1
1,769,415 - ABZR87_RS08325 0.34 +0.7
1,769,415 - ABZR87_RS08325 0.34 -0.2
1,769,415 - ABZR87_RS08325 0.34 -2.2
1,769,415 - ABZR87_RS08325 0.34 +0.1
1,769,415 - ABZR87_RS08325 0.34 +1.5
1,769,415 - ABZR87_RS08325 0.34 +0.3
1,769,416 + ABZR87_RS08325 0.34 +0.8
1,769,416 + ABZR87_RS08325 0.34 +0.6
1,769,416 + ABZR87_RS08325 0.34 +0.3
1,769,416 + ABZR87_RS08325 0.34 -1.9
1,769,416 + ABZR87_RS08325 0.34 +0.2
1,769,416 + ABZR87_RS08325 0.34 +0.9
1,769,416 + ABZR87_RS08325 0.34 +3.4
1,769,416 + ABZR87_RS08325 0.34 -0.1
1,769,416 + ABZR87_RS08325 0.34 -1.1
1,769,416 + ABZR87_RS08325 0.34 -0.0
1,769,416 + ABZR87_RS08325 0.34 +1.8
1,769,416 + ABZR87_RS08325 0.34 +0.1
1,769,416 + ABZR87_RS08325 0.34 -0.6
1,769,416 + ABZR87_RS08325 0.34 -0.1
1,769,417 - ABZR87_RS08325 0.34 +0.8
1,769,417 - ABZR87_RS08325 0.34 -0.7
1,769,417 - ABZR87_RS08325 0.34 -0.7
1,769,417 - ABZR87_RS08325 0.34 +2.4
1,769,417 - ABZR87_RS08325 0.34 +0.3
1,769,417 - ABZR87_RS08325 0.34 -0.7
1,769,417 - ABZR87_RS08325 0.34 +0.7
1,769,417 - ABZR87_RS08325 0.34 -1.9
1,769,417 - ABZR87_RS08325 0.34 +0.6
1,769,417 - ABZR87_RS08325 0.34 -0.4
1,769,417 - ABZR87_RS08325 0.34 -0.5
1,769,417 - ABZR87_RS08325 0.34 +2.0
1,769,417 - ABZR87_RS08325 0.34 -0.4
1,769,417 - ABZR87_RS08325 0.34 +1.5
1,769,417 - ABZR87_RS08325 0.34 -2.2
1,769,417 - ABZR87_RS08325 0.34 -0.4
1,769,417 - ABZR87_RS08325 0.34 -0.1
1,769,417 - ABZR87_RS08325 0.34 -0.2
1,769,417 - ABZR87_RS08325 0.34 +0.8
1,769,420 + ABZR87_RS08325 0.34 +0.3
1,769,420 + ABZR87_RS08325 0.34 -0.2
1,769,420 + ABZR87_RS08325 0.34 +0.0
1,769,421 - ABZR87_RS08325 0.35 +0.3
1,769,421 - ABZR87_RS08325 0.35 +0.6
1,769,421 - ABZR87_RS08325 0.35 +1.3
1,769,570 + ABZR87_RS08325 0.50 +0.1
1,769,570 + ABZR87_RS08325 0.50 +0.3
1,769,570 + ABZR87_RS08325 0.50 +0.1
1,769,570 + ABZR87_RS08325 0.50 +0.1
1,769,570 + ABZR87_RS08325 0.50 -0.6
1,769,571 - ABZR87_RS08325 0.51 -0.2
1,769,571 - ABZR87_RS08325 0.51 -1.1
1,769,571 - ABZR87_RS08325 0.51 -0.1
1,769,571 - ABZR87_RS08325 0.51 -0.0
1,769,571 - ABZR87_RS08325 0.51 +0.1
1,769,571 - ABZR87_RS08325 0.51 +0.7
1,769,780 + ABZR87_RS08325 0.73 -0.6
1,769,780 + ABZR87_RS08325 0.73 -0.9
1,769,780 + ABZR87_RS08325 0.73 +0.3
1,769,781 - ABZR87_RS08325 0.73 -0.5
1,769,781 - ABZR87_RS08325 0.73 +1.1
1,769,781 - ABZR87_RS08325 0.73 -1.6
1,769,781 - ABZR87_RS08325 0.73 -2.6
1,769,781 - ABZR87_RS08325 0.73 -0.7
1,769,781 - ABZR87_RS08325 0.73 +0.7
1,769,781 - ABZR87_RS08325 0.73 +0.2
1,769,831 + ABZR87_RS08325 0.78 +0.7
1,769,831 + ABZR87_RS08325 0.78 -2.0
1,769,831 + ABZR87_RS08325 0.78 +0.2
1,769,831 + ABZR87_RS08325 0.78 -0.1
1,769,832 - ABZR87_RS08325 0.79 -1.2
1,769,915 + ABZR87_RS08325 0.87 +0.3
1,769,985 - +0.7
1,770,030 - +0.2
1,770,030 - -1.4
1,770,157 + -0.3
1,770,169 - -0.6
1,770,169 - -1.4
1,770,172 + +0.1
1,770,233 + -0.6
1,770,234 - -0.3
1,770,238 + -2.2
1,770,238 + +0.4
1,770,238 + +0.2
1,770,238 + +1.5
1,770,238 + +0.5
1,770,239 - +0.2
1,770,239 - -0.5
1,770,239 - +0.3
1,770,239 - -0.6
1,770,268 - -1.1
1,770,268 - +0.2
1,770,304 + -0.1
1,770,304 + +0.3
1,770,304 + +0.0
1,770,305 - +0.4
1,770,331 + +0.4
1,770,332 - +1.6
1,770,463 + -0.5
1,770,464 - -1.2
1,770,464 - +0.6
1,770,500 - ABZR87_RS08330 0.11 -0.1
1,770,521 - ABZR87_RS08330 0.13 -0.3
1,770,521 - ABZR87_RS08330 0.13 +1.8
1,770,521 - ABZR87_RS08330 0.13 -0.8
1,770,610 + ABZR87_RS08330 0.18 +0.4
1,770,616 + ABZR87_RS08330 0.19 -0.0
1,770,616 + ABZR87_RS08330 0.19 -2.0
1,770,616 + ABZR87_RS08330 0.19 +0.5
1,770,616 + ABZR87_RS08330 0.19 -0.6
1,770,616 + ABZR87_RS08330 0.19 -0.2
1,770,617 - ABZR87_RS08330 0.19 -1.7
1,770,617 - ABZR87_RS08330 0.19 -0.0
1,770,721 + ABZR87_RS08330 0.25 -1.4
1,770,721 + ABZR87_RS08330 0.25 -0.3
1,770,721 + ABZR87_RS08330 0.25 +0.5
1,770,721 + ABZR87_RS08330 0.25 +2.0
1,770,721 + ABZR87_RS08330 0.25 +0.5
1,770,722 - ABZR87_RS08330 0.25 +0.7
1,770,722 - ABZR87_RS08330 0.25 +0.2
1,770,722 - ABZR87_RS08330 0.25 +0.0
1,770,722 - ABZR87_RS08330 0.25 -0.2
1,770,722 - ABZR87_RS08330 0.25 +0.0
1,770,722 - ABZR87_RS08330 0.25 -0.5
1,770,722 - ABZR87_RS08330 0.25 -0.6
1,770,898 + ABZR87_RS08330 0.36 -1.2
1,770,898 + ABZR87_RS08330 0.36 -1.7
1,770,898 + ABZR87_RS08330 0.36 -0.0
1,770,899 - ABZR87_RS08330 0.36 +1.3
1,770,899 - ABZR87_RS08330 0.36 +0.6
1,770,899 - ABZR87_RS08330 0.36 +0.0
1,770,899 - ABZR87_RS08330 0.36 +0.0
1,770,899 - ABZR87_RS08330 0.36 -0.9

Or see this region's nucleotide sequence