Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07570 and ABZR87_RS07575 are separated by 12 nucleotides ABZR87_RS07575 and ABZR87_RS07580 are separated by 231 nucleotides
ABZR87_RS07570: ABZR87_RS07570 - 50S ribosomal protein L13, at 1,607,109 to 1,607,537
_RS07570
ABZR87_RS07575: ABZR87_RS07575 - 30S ribosomal protein S9, at 1,607,550 to 1,607,942
_RS07575
ABZR87_RS07580: ABZR87_RS07580 - DUF6776 family protein, at 1,608,174 to 1,608,929
_RS07580
Position (kb)
1607
1608 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1606.583 kb on + strand at 1606.624 kb on - strand at 1606.733 kb on + strand at 1606.733 kb on + strand at 1606.733 kb on + strand at 1608.077 kb on + strand at 1608.078 kb on - strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.108 kb on + strand at 1608.109 kb on - strand at 1608.229 kb on + strand at 1608.229 kb on + strand at 1608.229 kb on + strand at 1608.230 kb on - strand at 1608.230 kb on - strand at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.277 kb on + strand, within ABZR87_RS07580 at 1608.278 kb on - strand, within ABZR87_RS07580 at 1608.278 kb on - strand, within ABZR87_RS07580 at 1608.585 kb on + strand, within ABZR87_RS07580 at 1608.585 kb on + strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.586 kb on - strand, within ABZR87_RS07580 at 1608.746 kb on + strand, within ABZR87_RS07580 at 1608.746 kb on + strand, within ABZR87_RS07580 at 1608.747 kb on - strand, within ABZR87_RS07580 at 1608.747 kb on - strand, within ABZR87_RS07580 at 1608.816 kb on + strand, within ABZR87_RS07580 at 1608.816 kb on + strand, within ABZR87_RS07580 at 1608.817 kb on - strand, within ABZR87_RS07580 at 1608.817 kb on - strand, within ABZR87_RS07580
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 1,606,583 + -1.1 1,606,624 - +1.4 1,606,733 + +0.5 1,606,733 + -1.4 1,606,733 + +0.1 1,608,077 + +0.7 1,608,078 - +0.4 1,608,108 + +0.1 1,608,108 + -0.2 1,608,108 + +0.1 1,608,108 + +0.3 1,608,108 + -0.1 1,608,109 - -1.5 1,608,229 + -2.3 1,608,229 + +1.0 1,608,229 + +0.0 1,608,230 - -0.9 1,608,230 - +0.3 1,608,277 + ABZR87_RS07580 0.14 -0.3 1,608,277 + ABZR87_RS07580 0.14 -0.7 1,608,277 + ABZR87_RS07580 0.14 +0.4 1,608,278 - ABZR87_RS07580 0.14 +0.5 1,608,278 - ABZR87_RS07580 0.14 +1.0 1,608,585 + ABZR87_RS07580 0.54 +2.2 1,608,585 + ABZR87_RS07580 0.54 -1.1 1,608,586 - ABZR87_RS07580 0.54 -0.8 1,608,586 - ABZR87_RS07580 0.54 +0.3 1,608,586 - ABZR87_RS07580 0.54 -0.1 1,608,746 + ABZR87_RS07580 0.76 +0.4 1,608,746 + ABZR87_RS07580 0.76 +0.9 1,608,747 - ABZR87_RS07580 0.76 -1.6 1,608,747 - ABZR87_RS07580 0.76 -0.4 1,608,816 + ABZR87_RS07580 0.85 -0.6 1,608,816 + ABZR87_RS07580 0.85 -0.3 1,608,817 - ABZR87_RS07580 0.85 +0.0 1,608,817 - ABZR87_RS07580 0.85 -0.1
Or see this region's nucleotide sequence