Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07230

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07225 and ABZR87_RS07230 are separated by 72 nucleotidesABZR87_RS07230 and ABZR87_RS07235 overlap by 4 nucleotides ABZR87_RS07225: ABZR87_RS07225 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 1,530,350 to 1,531,567 _RS07225 ABZR87_RS07230: ABZR87_RS07230 - polysaccharide deacetylase family protein, at 1,531,640 to 1,532,503 _RS07230 ABZR87_RS07235: ABZR87_RS07235 - MMPL family transporter, at 1,532,500 to 1,534,920 _RS07235 Position (kb) 1531 1532 1533Strain fitness (log2 ratio) -1 0 1 2 3at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.696 kb on + strand, within ABZR87_RS07225at 1530.697 kb on - strand, within ABZR87_RS07225at 1530.697 kb on - strand, within ABZR87_RS07225at 1530.907 kb on + strand, within ABZR87_RS07225at 1530.907 kb on + strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.908 kb on - strand, within ABZR87_RS07225at 1530.927 kb on + strand, within ABZR87_RS07225at 1530.928 kb on - strand, within ABZR87_RS07225at 1530.928 kb on - strand, within ABZR87_RS07225at 1530.975 kb on + strand, within ABZR87_RS07225at 1530.976 kb on - strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.125 kb on + strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.126 kb on - strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.152 kb on + strand, within ABZR87_RS07225at 1531.153 kb on - strand, within ABZR87_RS07225at 1531.221 kb on + strand, within ABZR87_RS07225at 1531.221 kb on + strand, within ABZR87_RS07225at 1531.222 kb on - strand, within ABZR87_RS07225at 1531.222 kb on - strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.268 kb on + strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.269 kb on - strand, within ABZR87_RS07225at 1531.628 kb on + strandat 1531.628 kb on + strandat 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.808 kb on + strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1531.809 kb on - strand, within ABZR87_RS07230at 1532.068 kb on + strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.069 kb on - strand, within ABZR87_RS07230at 1532.187 kb on + strand, within ABZR87_RS07230at 1532.727 kb on - strandat 1532.727 kb on - strandat 1532.942 kb on + strand, within ABZR87_RS07235at 1532.942 kb on + strand, within ABZR87_RS07235at 1532.943 kb on - strand, within ABZR87_RS07235at 1532.943 kb on - strand, within ABZR87_RS07235at 1532.951 kb on + strand, within ABZR87_RS07235at 1532.952 kb on - strand, within ABZR87_RS07235at 1532.952 kb on - strand, within ABZR87_RS07235at 1533.063 kb on + strand, within ABZR87_RS07235at 1533.063 kb on + strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.064 kb on - strand, within ABZR87_RS07235at 1533.360 kb on - strand, within ABZR87_RS07235at 1533.360 kb on - strand, within ABZR87_RS07235at 1533.482 kb on + strand, within ABZR87_RS07235at 1533.482 kb on + strand, within ABZR87_RS07235

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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1,530,696 + ABZR87_RS07225 0.28 +0.1
1,530,696 + ABZR87_RS07225 0.28 -0.4
1,530,696 + ABZR87_RS07225 0.28 +0.1
1,530,696 + ABZR87_RS07225 0.28 +1.9
1,530,696 + ABZR87_RS07225 0.28 -0.3
1,530,697 - ABZR87_RS07225 0.28 +0.5
1,530,697 - ABZR87_RS07225 0.28 +1.0
1,530,907 + ABZR87_RS07225 0.46 -0.7
1,530,907 + ABZR87_RS07225 0.46 +0.7
1,530,908 - ABZR87_RS07225 0.46 -0.3
1,530,908 - ABZR87_RS07225 0.46 +0.3
1,530,908 - ABZR87_RS07225 0.46 -0.4
1,530,927 + ABZR87_RS07225 0.47 -0.4
1,530,928 - ABZR87_RS07225 0.47 +1.0
1,530,928 - ABZR87_RS07225 0.47 +0.6
1,530,975 + ABZR87_RS07225 0.51 +0.1
1,530,976 - ABZR87_RS07225 0.51 +0.2
1,531,125 + ABZR87_RS07225 0.64 -0.5
1,531,125 + ABZR87_RS07225 0.64 -0.4
1,531,125 + ABZR87_RS07225 0.64 +3.2
1,531,125 + ABZR87_RS07225 0.64 -0.1
1,531,126 - ABZR87_RS07225 0.64 +0.2
1,531,126 - ABZR87_RS07225 0.64 -1.1
1,531,126 - ABZR87_RS07225 0.64 -0.6
1,531,126 - ABZR87_RS07225 0.64 +0.5
1,531,152 + ABZR87_RS07225 0.66 -1.2
1,531,152 + ABZR87_RS07225 0.66 -1.2
1,531,152 + ABZR87_RS07225 0.66 -0.9
1,531,152 + ABZR87_RS07225 0.66 -0.0
1,531,152 + ABZR87_RS07225 0.66 -0.8
1,531,152 + ABZR87_RS07225 0.66 +0.2
1,531,153 - ABZR87_RS07225 0.66 -0.1
1,531,221 + ABZR87_RS07225 0.72 +0.2
1,531,221 + ABZR87_RS07225 0.72 -0.4
1,531,222 - ABZR87_RS07225 0.72 +0.8
1,531,222 - ABZR87_RS07225 0.72 +0.8
1,531,268 + ABZR87_RS07225 0.75 -0.3
1,531,268 + ABZR87_RS07225 0.75 -0.0
1,531,268 + ABZR87_RS07225 0.75 -1.5
1,531,269 - ABZR87_RS07225 0.75 +0.5
1,531,269 - ABZR87_RS07225 0.75 -0.6
1,531,269 - ABZR87_RS07225 0.75 -1.3
1,531,269 - ABZR87_RS07225 0.75 -0.7
1,531,269 - ABZR87_RS07225 0.75 -0.6
1,531,628 + +0.8
1,531,628 + -0.7
1,531,808 + ABZR87_RS07230 0.19 +0.5
1,531,808 + ABZR87_RS07230 0.19 -0.5
1,531,808 + ABZR87_RS07230 0.19 +0.3
1,531,808 + ABZR87_RS07230 0.19 +0.2
1,531,809 - ABZR87_RS07230 0.20 +0.8
1,531,809 - ABZR87_RS07230 0.20 +0.4
1,531,809 - ABZR87_RS07230 0.20 +0.9
1,531,809 - ABZR87_RS07230 0.20 +2.0
1,532,068 + ABZR87_RS07230 0.50 -0.9
1,532,069 - ABZR87_RS07230 0.50 -1.5
1,532,069 - ABZR87_RS07230 0.50 -1.5
1,532,069 - ABZR87_RS07230 0.50 +0.4
1,532,187 + ABZR87_RS07230 0.63 +0.5
1,532,727 - -1.3
1,532,727 - -0.1
1,532,942 + ABZR87_RS07235 0.18 -0.2
1,532,942 + ABZR87_RS07235 0.18 -1.5
1,532,943 - ABZR87_RS07235 0.18 -0.6
1,532,943 - ABZR87_RS07235 0.18 +0.3
1,532,951 + ABZR87_RS07235 0.19 -0.5
1,532,952 - ABZR87_RS07235 0.19 +0.9
1,532,952 - ABZR87_RS07235 0.19 +0.2
1,533,063 + ABZR87_RS07235 0.23 +1.8
1,533,063 + ABZR87_RS07235 0.23 -0.2
1,533,064 - ABZR87_RS07235 0.23 -0.7
1,533,064 - ABZR87_RS07235 0.23 +1.1
1,533,064 - ABZR87_RS07235 0.23 -0.5
1,533,360 - ABZR87_RS07235 0.36 +0.1
1,533,360 - ABZR87_RS07235 0.36 -0.9
1,533,482 + ABZR87_RS07235 0.41 -0.9
1,533,482 + ABZR87_RS07235 0.41 -0.8

Or see this region's nucleotide sequence