Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07000

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06990 and ABZR87_RS06995 are separated by 78 nucleotidesABZR87_RS06995 and ABZR87_RS07000 are separated by 50 nucleotidesABZR87_RS07000 and ABZR87_RS07005 are separated by 14 nucleotidesABZR87_RS07005 and ABZR87_RS07010 overlap by 1 nucleotides ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629 _RS06990 ABZR87_RS06995: ABZR87_RS06995 - tRNA-Gln, at 1,477,708 to 1,477,784 _RS06995 ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704 _RS07000 ABZR87_RS07005: ABZR87_RS07005 - lipoprotein insertase outer membrane protein LolB, at 1,478,719 to 1,479,342 _RS07005 ABZR87_RS07010: ABZR87_RS07010 - tetratricopeptide repeat protein, at 1,479,342 to 1,481,279 _RS07010 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -2 -1 0 1 2at 1477.697 kb on - strandat 1477.697 kb on - strandat 1477.697 kb on - strandat 1477.697 kb on - strandat 1478.721 kb on - strandat 1478.721 kb on - strandat 1478.843 kb on + strand, within ABZR87_RS07005at 1478.844 kb on - strand, within ABZR87_RS07005at 1478.844 kb on - strand, within ABZR87_RS07005at 1479.180 kb on - strand, within ABZR87_RS07005at 1479.180 kb on - strand, within ABZR87_RS07005at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010at 1479.608 kb on - strand, within ABZR87_RS07010

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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1,477,697 - +2.5
1,477,697 - +1.9
1,477,697 - +0.4
1,477,697 - +0.8
1,478,721 - +0.6
1,478,721 - +0.6
1,478,843 + ABZR87_RS07005 0.20 +0.8
1,478,844 - ABZR87_RS07005 0.20 +0.2
1,478,844 - ABZR87_RS07005 0.20 +0.2
1,479,180 - ABZR87_RS07005 0.74 +1.8
1,479,180 - ABZR87_RS07005 0.74 +0.5
1,479,608 - ABZR87_RS07010 0.14 -1.2
1,479,608 - ABZR87_RS07010 0.14 +0.8
1,479,608 - ABZR87_RS07010 0.14 -0.2
1,479,608 - ABZR87_RS07010 0.14 -1.8
1,479,608 - ABZR87_RS07010 0.14 -1.2
1,479,608 - ABZR87_RS07010 0.14 -0.7
1,479,608 - ABZR87_RS07010 0.14 +0.2
1,479,608 - ABZR87_RS07010 0.14 +1.9

Or see this region's nucleotide sequence