Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04690 and ABZR87_RS04695 are separated by 71 nucleotides ABZR87_RS04695 and ABZR87_RS04700 are separated by 73 nucleotides ABZR87_RS04700 and ABZR87_RS04705 overlap by 4 nucleotides ABZR87_RS04705 and ABZR87_RS04710 are separated by 2 nucleotides
ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327
_RS04690
ABZR87_RS04695: ABZR87_RS04695 - hypothetical protein, at 980,399 to 980,788
_RS04695
ABZR87_RS04700: ABZR87_RS04700 - FAD-binding oxidoreductase, at 980,862 to 982,181
_RS04700
ABZR87_RS04705: ABZR87_RS04705 - amino acid ABC transporter ATP-binding protein, at 982,178 to 982,939
_RS04705
ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613
_RS04710
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 979.920 kb on + strand, within ABZR87_RS04690 at 979.921 kb on - strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.199 kb on + strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.400 kb on + strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.443 kb on + strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.712 kb on + strand, within ABZR87_RS04695 at 980.713 kb on - strand, within ABZR87_RS04695 at 980.827 kb on - strand at 980.890 kb on + strand at 980.890 kb on + strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 981.137 kb on - strand, within ABZR87_RS04700 at 981.137 kb on - strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.369 kb on - strand, within ABZR87_RS04700 at 981.369 kb on - strand, within ABZR87_RS04700 at 981.424 kb on + strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.751 kb on + strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.822 kb on + strand, within ABZR87_RS04700 at 981.822 kb on + strand, within ABZR87_RS04700 at 981.823 kb on - strand, within ABZR87_RS04700 at 981.823 kb on - strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.031 kb on - strand, within ABZR87_RS04700 at 982.031 kb on - strand, within ABZR87_RS04700 at 982.542 kb on + strand, within ABZR87_RS04705 at 982.543 kb on - strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.782 kb on + strand, within ABZR87_RS04705 at 982.782 kb on + strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 983.021 kb on + strand, within ABZR87_RS04710 at 983.021 kb on + strand, within ABZR87_RS04710 at 983.022 kb on - strand, within ABZR87_RS04710 at 983.022 kb on - strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.043 kb on - strand, within ABZR87_RS04710 at 983.162 kb on + strand, within ABZR87_RS04710 at 983.163 kb on - strand, within ABZR87_RS04710
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 979,920 + ABZR87_RS04690 0.53 +0.3 979,921 - ABZR87_RS04690 0.53 -0.6 980,151 + ABZR87_RS04690 0.80 +0.3 980,151 + ABZR87_RS04690 0.80 +0.2 980,151 + ABZR87_RS04690 0.80 +2.3 980,152 - ABZR87_RS04690 0.80 -0.3 980,152 - ABZR87_RS04690 0.80 -0.0 980,199 + ABZR87_RS04690 0.85 -0.0 980,200 - ABZR87_RS04690 0.85 -1.3 980,200 - ABZR87_RS04690 0.85 +0.8 980,400 + -0.9 980,401 - +1.5 980,401 - -1.8 980,401 - -1.8 980,443 + ABZR87_RS04695 0.11 -0.6 980,444 - ABZR87_RS04695 0.12 +1.2 980,444 - ABZR87_RS04695 0.12 -0.6 980,712 + ABZR87_RS04695 0.80 +1.2 980,713 - ABZR87_RS04695 0.81 -0.1 980,827 - -0.3 980,890 + -0.4 980,890 + +1.5 980,891 - -1.8 980,891 - -0.9 980,891 - -0.5 980,891 - -0.7 980,891 - -0.7 980,914 + +0.2 980,914 + -0.2 980,914 + -0.7 980,914 + -1.2 980,914 + -1.5 980,914 + +3.3 980,914 + +1.2 980,915 - -1.7 980,915 - +0.2 980,915 - +0.2 980,915 - +1.2 980,915 - -0.9 980,915 - -0.6 981,137 - ABZR87_RS04700 0.21 +0.4 981,137 - ABZR87_RS04700 0.21 -0.6 981,277 + ABZR87_RS04700 0.31 +0.1 981,277 + ABZR87_RS04700 0.31 -1.0 981,368 + ABZR87_RS04700 0.38 -0.6 981,368 + ABZR87_RS04700 0.38 -0.6 981,368 + ABZR87_RS04700 0.38 -0.5 981,369 - ABZR87_RS04700 0.38 -2.0 981,369 - ABZR87_RS04700 0.38 +3.0 981,424 + ABZR87_RS04700 0.43 -0.9 981,425 - ABZR87_RS04700 0.43 -0.5 981,425 - ABZR87_RS04700 0.43 -1.8 981,425 - ABZR87_RS04700 0.43 -1.5 981,751 + ABZR87_RS04700 0.67 +0.4 981,752 - ABZR87_RS04700 0.67 -1.1 981,752 - ABZR87_RS04700 0.67 +1.3 981,752 - ABZR87_RS04700 0.67 +1.9 981,822 + ABZR87_RS04700 0.73 -0.3 981,822 + ABZR87_RS04700 0.73 -0.8 981,823 - ABZR87_RS04700 0.73 +0.6 981,823 - ABZR87_RS04700 0.73 +0.1 982,030 + ABZR87_RS04700 0.88 -2.5 982,030 + ABZR87_RS04700 0.88 +1.3 982,030 + ABZR87_RS04700 0.88 -2.6 982,031 - ABZR87_RS04700 0.89 -0.9 982,031 - ABZR87_RS04700 0.89 -1.2 982,542 + ABZR87_RS04705 0.48 +1.5 982,543 - ABZR87_RS04705 0.48 -0.2 982,629 + ABZR87_RS04705 0.59 -0.3 982,629 + ABZR87_RS04705 0.59 -0.2 982,629 + ABZR87_RS04705 0.59 -1.8 982,630 - ABZR87_RS04705 0.59 +0.5 982,630 - ABZR87_RS04705 0.59 +0.4 982,630 - ABZR87_RS04705 0.59 -1.0 982,630 - ABZR87_RS04705 0.59 -0.7 982,630 - ABZR87_RS04705 0.59 +0.3 982,782 + ABZR87_RS04705 0.79 +1.8 982,782 + ABZR87_RS04705 0.79 +1.5 982,783 - ABZR87_RS04705 0.79 +3.1 982,783 - ABZR87_RS04705 0.79 -0.7 982,783 - ABZR87_RS04705 0.79 +0.2 982,783 - ABZR87_RS04705 0.79 +0.2 982,783 - ABZR87_RS04705 0.79 -0.0 982,783 - ABZR87_RS04705 0.79 -0.3 983,021 + ABZR87_RS04710 0.12 +0.2 983,021 + ABZR87_RS04710 0.12 +0.3 983,022 - ABZR87_RS04710 0.12 +0.0 983,022 - ABZR87_RS04710 0.12 +1.0 983,042 + ABZR87_RS04710 0.15 +0.2 983,042 + ABZR87_RS04710 0.15 +1.1 983,042 + ABZR87_RS04710 0.15 +0.1 983,043 - ABZR87_RS04710 0.15 -0.8 983,162 + ABZR87_RS04710 0.33 -0.2 983,163 - ABZR87_RS04710 0.33 +1.3
Or see this region's nucleotide sequence