Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03870 and ABZR87_RS03875 are separated by 3 nucleotides ABZR87_RS03875 and ABZR87_RS03880 are separated by 116 nucleotides ABZR87_RS03880 and ABZR87_RS03885 are separated by 345 nucleotides
ABZR87_RS03870: ABZR87_RS03870 - YigZ family protein, at 799,031 to 799,615
_RS03870
ABZR87_RS03875: ABZR87_RS03875 - hypothetical protein, at 799,619 to 800,044
_RS03875
ABZR87_RS03880: ABZR87_RS03880 - LysR family transcriptional regulator, at 800,161 to 801,072
_RS03880
ABZR87_RS03885: ABZR87_RS03885 - glyoxylate carboligase, at 801,418 to 803,193
_RS03885
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.316 kb on + strand, within ABZR87_RS03870 at 799.316 kb on + strand, within ABZR87_RS03870 at 799.361 kb on + strand, within ABZR87_RS03870 at 799.361 kb on + strand, within ABZR87_RS03870 at 799.362 kb on - strand, within ABZR87_RS03870 at 799.362 kb on - strand, within ABZR87_RS03870 at 799.429 kb on + strand, within ABZR87_RS03870 at 799.429 kb on + strand, within ABZR87_RS03870 at 799.430 kb on - strand, within ABZR87_RS03870 at 799.490 kb on + strand, within ABZR87_RS03870 at 799.491 kb on - strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.511 kb on + strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.512 kb on - strand, within ABZR87_RS03870 at 799.513 kb on - strand, within ABZR87_RS03870 at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.609 kb on + strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.610 kb on - strand at 799.613 kb on + strand at 799.613 kb on + strand at 799.614 kb on - strand at 799.620 kb on + strand at 799.620 kb on + strand at 799.698 kb on + strand, within ABZR87_RS03875 at 799.698 kb on + strand, within ABZR87_RS03875 at 799.699 kb on - strand, within ABZR87_RS03875 at 799.699 kb on - strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.748 kb on + strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.749 kb on - strand, within ABZR87_RS03875 at 799.890 kb on + strand, within ABZR87_RS03875 at 799.890 kb on + strand, within ABZR87_RS03875 at 799.891 kb on - strand, within ABZR87_RS03875 at 800.072 kb on + strand at 800.072 kb on + strand at 800.072 kb on + strand at 800.072 kb on + strand at 800.072 kb on + strand at 800.073 kb on - strand at 800.073 kb on - strand at 800.073 kb on - strand at 800.073 kb on - strand at 800.073 kb on - strand at 800.130 kb on + strand at 800.130 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.162 kb on + strand at 800.163 kb on - strand at 800.163 kb on - strand at 800.163 kb on - strand at 800.163 kb on - strand at 800.163 kb on - strand at 800.180 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on + strand at 800.195 kb on - strand at 800.196 kb on - strand at 800.196 kb on - strand at 800.196 kb on - strand at 800.196 kb on - strand at 800.196 kb on - strand at 800.196 kb on - strand at 800.217 kb on + strand at 800.217 kb on + strand at 800.259 kb on - strand, within ABZR87_RS03880 at 800.276 kb on + strand, within ABZR87_RS03880 at 800.291 kb on + strand, within ABZR87_RS03880 at 800.291 kb on + strand, within ABZR87_RS03880 at 800.291 kb on + strand, within ABZR87_RS03880 at 800.465 kb on + strand, within ABZR87_RS03880 at 800.466 kb on - strand, within ABZR87_RS03880 at 800.553 kb on + strand, within ABZR87_RS03880 at 800.554 kb on - strand, within ABZR87_RS03880 at 800.561 kb on + strand, within ABZR87_RS03880 at 800.561 kb on + strand, within ABZR87_RS03880 at 800.561 kb on + strand, within ABZR87_RS03880 at 800.561 kb on + strand, within ABZR87_RS03880 at 800.561 kb on + strand, within ABZR87_RS03880 at 800.562 kb on - strand, within ABZR87_RS03880 at 800.562 kb on - strand, within ABZR87_RS03880 at 800.562 kb on - strand, within ABZR87_RS03880 at 800.657 kb on + strand, within ABZR87_RS03880 at 800.657 kb on + strand, within ABZR87_RS03880 at 800.658 kb on - strand, within ABZR87_RS03880 at 800.658 kb on - strand, within ABZR87_RS03880 at 800.658 kb on - strand, within ABZR87_RS03880 at 800.658 kb on - strand, within ABZR87_RS03880 at 801.106 kb on + strand at 801.107 kb on - strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.146 kb on + strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.147 kb on - strand at 801.212 kb on + strand at 801.370 kb on + strand at 801.387 kb on + strand at 801.387 kb on + strand at 801.388 kb on - strand at 801.388 kb on - strand at 801.504 kb on + strand at 801.505 kb on - strand at 801.517 kb on + strand at 801.517 kb on + strand at 801.517 kb on + strand at 801.517 kb on + strand at 801.517 kb on + strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.518 kb on - strand at 801.586 kb on - strand at 801.586 kb on - strand at 801.598 kb on + strand, within ABZR87_RS03885 at 801.598 kb on + strand, within ABZR87_RS03885 at 801.598 kb on + strand, within ABZR87_RS03885 at 801.598 kb on + strand, within ABZR87_RS03885 at 801.599 kb on - strand, within ABZR87_RS03885 at 801.599 kb on - strand, within ABZR87_RS03885 at 801.680 kb on - strand, within ABZR87_RS03885 at 801.745 kb on + strand, within ABZR87_RS03885 at 801.745 kb on + strand, within ABZR87_RS03885 at 801.745 kb on + strand, within ABZR87_RS03885 at 801.745 kb on + strand, within ABZR87_RS03885 at 801.745 kb on + strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.746 kb on - strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.949 kb on + strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.950 kb on - strand, within ABZR87_RS03885 at 801.951 kb on + strand, within ABZR87_RS03885 at 801.951 kb on + strand, within ABZR87_RS03885 at 801.951 kb on + strand, within ABZR87_RS03885 at 801.951 kb on + strand, within ABZR87_RS03885 at 801.952 kb on - strand, within ABZR87_RS03885 at 801.952 kb on - strand, within ABZR87_RS03885 at 801.952 kb on - strand, within ABZR87_RS03885 at 801.952 kb on - strand, within ABZR87_RS03885 at 801.967 kb on + strand, within ABZR87_RS03885 at 801.968 kb on - strand, within ABZR87_RS03885 at 801.968 kb on - strand, within ABZR87_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 799,316 + ABZR87_RS03870 0.49 +1.2 799,316 + ABZR87_RS03870 0.49 -1.2 799,361 + ABZR87_RS03870 0.56 -0.4 799,361 + ABZR87_RS03870 0.56 +1.5 799,362 - ABZR87_RS03870 0.57 +0.3 799,362 - ABZR87_RS03870 0.57 +0.7 799,429 + ABZR87_RS03870 0.68 -0.6 799,429 + ABZR87_RS03870 0.68 -0.9 799,430 - ABZR87_RS03870 0.68 +1.0 799,490 + ABZR87_RS03870 0.78 +0.6 799,491 - ABZR87_RS03870 0.79 -0.7 799,511 + ABZR87_RS03870 0.82 -0.7 799,511 + ABZR87_RS03870 0.82 -1.6 799,511 + ABZR87_RS03870 0.82 +0.8 799,511 + ABZR87_RS03870 0.82 -0.4 799,511 + ABZR87_RS03870 0.82 -1.5 799,511 + ABZR87_RS03870 0.82 -0.1 799,511 + ABZR87_RS03870 0.82 -2.1 799,512 - ABZR87_RS03870 0.82 +1.4 799,512 - ABZR87_RS03870 0.82 -0.9 799,512 - ABZR87_RS03870 0.82 +0.4 799,512 - ABZR87_RS03870 0.82 -0.3 799,512 - ABZR87_RS03870 0.82 -0.4 799,512 - ABZR87_RS03870 0.82 +1.2 799,512 - ABZR87_RS03870 0.82 +0.5 799,513 - ABZR87_RS03870 0.82 +0.1 799,609 + -1.2 799,609 + +0.5 799,609 + +0.5 799,609 + -0.3 799,609 + +0.1 799,609 + +1.4 799,610 - -0.7 799,610 - -0.3 799,610 - -1.3 799,610 - -1.1 799,610 - +0.1 799,613 + -0.5 799,613 + +1.1 799,614 - -1.3 799,620 + -0.6 799,620 + +0.7 799,698 + ABZR87_RS03875 0.19 -0.0 799,698 + ABZR87_RS03875 0.19 +0.3 799,699 - ABZR87_RS03875 0.19 +0.6 799,699 - ABZR87_RS03875 0.19 +2.0 799,748 + ABZR87_RS03875 0.30 +1.5 799,748 + ABZR87_RS03875 0.30 +1.0 799,748 + ABZR87_RS03875 0.30 +0.6 799,748 + ABZR87_RS03875 0.30 +0.6 799,748 + ABZR87_RS03875 0.30 -0.4 799,748 + ABZR87_RS03875 0.30 -1.7 799,748 + ABZR87_RS03875 0.30 -0.5 799,748 + ABZR87_RS03875 0.30 -1.1 799,748 + ABZR87_RS03875 0.30 +1.4 799,748 + ABZR87_RS03875 0.30 -0.1 799,749 - ABZR87_RS03875 0.31 -0.9 799,749 - ABZR87_RS03875 0.31 -0.4 799,749 - ABZR87_RS03875 0.31 -1.3 799,749 - ABZR87_RS03875 0.31 +0.1 799,749 - ABZR87_RS03875 0.31 +1.3 799,749 - ABZR87_RS03875 0.31 -0.7 799,749 - ABZR87_RS03875 0.31 +0.7 799,749 - ABZR87_RS03875 0.31 -0.1 799,749 - ABZR87_RS03875 0.31 +0.1 799,890 + ABZR87_RS03875 0.64 -1.3 799,890 + ABZR87_RS03875 0.64 -1.2 799,891 - ABZR87_RS03875 0.64 -0.3 800,072 + -0.6 800,072 + +2.4 800,072 + -0.4 800,072 + -0.4 800,072 + -1.9 800,073 - +0.1 800,073 - +0.6 800,073 - -2.2 800,073 - -1.3 800,073 - -0.4 800,130 + +1.4 800,130 + +0.9 800,162 + +0.3 800,162 + -0.8 800,162 + +2.8 800,162 + -0.7 800,162 + -0.0 800,162 + -0.3 800,162 + +1.1 800,163 - +1.4 800,163 - +0.1 800,163 - -1.4 800,163 - -0.9 800,163 - +0.1 800,180 + +1.0 800,195 + -1.0 800,195 + -1.9 800,195 + -0.8 800,195 + -0.1 800,195 + +1.9 800,195 + -0.3 800,195 + +0.9 800,195 + +0.7 800,195 - -1.6 800,196 - +3.5 800,196 - +0.8 800,196 - -0.4 800,196 - -0.4 800,196 - +0.2 800,196 - +1.6 800,217 + -0.5 800,217 + -0.4 800,259 - ABZR87_RS03880 0.11 +0.5 800,276 + ABZR87_RS03880 0.13 +1.9 800,291 + ABZR87_RS03880 0.14 -0.7 800,291 + ABZR87_RS03880 0.14 -0.1 800,291 + ABZR87_RS03880 0.14 -0.0 800,465 + ABZR87_RS03880 0.33 -0.7 800,466 - ABZR87_RS03880 0.33 +0.2 800,553 + ABZR87_RS03880 0.43 +0.8 800,554 - ABZR87_RS03880 0.43 -1.0 800,561 + ABZR87_RS03880 0.44 +1.4 800,561 + ABZR87_RS03880 0.44 +0.3 800,561 + ABZR87_RS03880 0.44 +1.5 800,561 + ABZR87_RS03880 0.44 +0.1 800,561 + ABZR87_RS03880 0.44 -0.4 800,562 - ABZR87_RS03880 0.44 +0.2 800,562 - ABZR87_RS03880 0.44 -0.3 800,562 - ABZR87_RS03880 0.44 +0.7 800,657 + ABZR87_RS03880 0.54 -0.3 800,657 + ABZR87_RS03880 0.54 -0.9 800,658 - ABZR87_RS03880 0.54 +0.3 800,658 - ABZR87_RS03880 0.54 +1.5 800,658 - ABZR87_RS03880 0.54 -0.3 800,658 - ABZR87_RS03880 0.54 +1.7 801,106 + +0.7 801,107 - +1.1 801,146 + +0.9 801,146 + -0.3 801,146 + +0.2 801,146 + -1.3 801,146 + +1.4 801,146 + +1.7 801,146 + -1.6 801,146 + +0.9 801,146 + -0.9 801,147 - -0.6 801,147 - -0.7 801,147 - +0.0 801,147 - -0.4 801,147 - +0.4 801,147 - -0.6 801,147 - +0.3 801,147 - -0.7 801,147 - +0.1 801,147 - +0.3 801,212 + +0.4 801,370 + +0.6 801,387 + -0.7 801,387 + +0.3 801,388 - +0.4 801,388 - +0.5 801,504 + -0.2 801,505 - -0.8 801,517 + +0.1 801,517 + -1.1 801,517 + +0.6 801,517 + +0.7 801,517 + -1.5 801,518 - -0.9 801,518 - -1.5 801,518 - +0.4 801,518 - +1.1 801,518 - +0.1 801,518 - -1.0 801,518 - -0.6 801,586 - -1.3 801,586 - -1.0 801,598 + ABZR87_RS03885 0.10 -1.4 801,598 + ABZR87_RS03885 0.10 -0.8 801,598 + ABZR87_RS03885 0.10 -1.7 801,598 + ABZR87_RS03885 0.10 -0.4 801,599 - ABZR87_RS03885 0.10 -0.0 801,599 - ABZR87_RS03885 0.10 -0.4 801,680 - ABZR87_RS03885 0.15 +0.9 801,745 + ABZR87_RS03885 0.18 +1.9 801,745 + ABZR87_RS03885 0.18 +0.9 801,745 + ABZR87_RS03885 0.18 +0.4 801,745 + ABZR87_RS03885 0.18 +0.2 801,745 + ABZR87_RS03885 0.18 +1.4 801,746 - ABZR87_RS03885 0.18 +1.8 801,746 - ABZR87_RS03885 0.18 +1.0 801,746 - ABZR87_RS03885 0.18 -0.7 801,746 - ABZR87_RS03885 0.18 +2.0 801,746 - ABZR87_RS03885 0.18 +0.4 801,746 - ABZR87_RS03885 0.18 +0.2 801,949 + ABZR87_RS03885 0.30 +0.8 801,949 + ABZR87_RS03885 0.30 +1.1 801,949 + ABZR87_RS03885 0.30 -0.6 801,949 + ABZR87_RS03885 0.30 +0.3 801,949 + ABZR87_RS03885 0.30 -0.8 801,949 + ABZR87_RS03885 0.30 +0.7 801,949 + ABZR87_RS03885 0.30 +1.2 801,949 + ABZR87_RS03885 0.30 +1.5 801,949 + ABZR87_RS03885 0.30 +0.8 801,949 + ABZR87_RS03885 0.30 +0.7 801,949 + ABZR87_RS03885 0.30 +1.5 801,949 + ABZR87_RS03885 0.30 -1.8 801,950 - ABZR87_RS03885 0.30 +0.4 801,950 - ABZR87_RS03885 0.30 -1.0 801,950 - ABZR87_RS03885 0.30 -0.7 801,950 - ABZR87_RS03885 0.30 -0.5 801,950 - ABZR87_RS03885 0.30 -0.5 801,950 - ABZR87_RS03885 0.30 +0.2 801,950 - ABZR87_RS03885 0.30 -0.3 801,950 - ABZR87_RS03885 0.30 -2.3 801,950 - ABZR87_RS03885 0.30 +1.3 801,950 - ABZR87_RS03885 0.30 +0.2 801,950 - ABZR87_RS03885 0.30 -0.3 801,950 - ABZR87_RS03885 0.30 +1.3 801,950 - ABZR87_RS03885 0.30 +0.7 801,950 - ABZR87_RS03885 0.30 +0.0 801,950 - ABZR87_RS03885 0.30 +1.2 801,950 - ABZR87_RS03885 0.30 +0.7 801,950 - ABZR87_RS03885 0.30 +0.9 801,950 - ABZR87_RS03885 0.30 +0.2 801,950 - ABZR87_RS03885 0.30 +0.9 801,950 - ABZR87_RS03885 0.30 +2.5 801,950 - ABZR87_RS03885 0.30 -1.2 801,950 - ABZR87_RS03885 0.30 -2.8 801,951 + ABZR87_RS03885 0.30 +0.5 801,951 + ABZR87_RS03885 0.30 -1.1 801,951 + ABZR87_RS03885 0.30 -0.2 801,951 + ABZR87_RS03885 0.30 -0.5 801,952 - ABZR87_RS03885 0.30 +0.3 801,952 - ABZR87_RS03885 0.30 +0.3 801,952 - ABZR87_RS03885 0.30 -0.3 801,952 - ABZR87_RS03885 0.30 +0.3 801,967 + ABZR87_RS03885 0.31 -0.1 801,968 - ABZR87_RS03885 0.31 +0.5 801,968 - ABZR87_RS03885 0.31 -0.1
Or see this region's nucleotide sequence