Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03570

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03560 and ABZR87_RS03565 are separated by 131 nucleotidesABZR87_RS03565 and ABZR87_RS03570 are separated by 103 nucleotidesABZR87_RS03570 and ABZR87_RS03575 are separated by 6 nucleotidesABZR87_RS03575 and ABZR87_RS03580 are separated by 243 nucleotides ABZR87_RS03560: ABZR87_RS03560 - hypothetical protein, at 748,043 to 748,630 _RS03560 ABZR87_RS03565: ABZR87_RS03565 - TetR/AcrR family transcriptional regulator, at 748,762 to 749,370 _RS03565 ABZR87_RS03570: ABZR87_RS03570 - MFS transporter, at 749,474 to 750,940 _RS03570 ABZR87_RS03575: ABZR87_RS03575 - undecaprenyl-diphosphatase, at 750,947 to 751,546 _RS03575 ABZR87_RS03580: ABZR87_RS03580 - sensor domain-containing diguanylate cyclase, at 751,790 to 753,157 _RS03580 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2at 748.557 kb on + strand, within ABZR87_RS03560at 748.557 kb on + strand, within ABZR87_RS03560at 748.557 kb on + strand, within ABZR87_RS03560at 748.558 kb on - strand, within ABZR87_RS03560at 748.558 kb on - strand, within ABZR87_RS03560at 748.558 kb on - strand, within ABZR87_RS03560at 748.630 kb on + strandat 748.630 kb on + strandat 748.630 kb on + strandat 748.630 kb on + strandat 748.630 kb on + strandat 748.630 kb on + strandat 748.630 kb on + strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.631 kb on - strandat 748.686 kb on + strandat 748.686 kb on + strandat 748.687 kb on - strandat 748.687 kb on - strandat 748.687 kb on - strandat 748.935 kb on + strand, within ABZR87_RS03565at 749.016 kb on - strand, within ABZR87_RS03565at 749.021 kb on + strand, within ABZR87_RS03565at 749.021 kb on + strand, within ABZR87_RS03565at 749.021 kb on + strand, within ABZR87_RS03565at 749.021 kb on + strand, within ABZR87_RS03565at 749.021 kb on + strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.022 kb on - strand, within ABZR87_RS03565at 749.072 kb on + strand, within ABZR87_RS03565at 749.072 kb on + strand, within ABZR87_RS03565at 749.072 kb on + strand, within ABZR87_RS03565at 749.072 kb on + strand, within ABZR87_RS03565at 749.072 kb on + strand, within ABZR87_RS03565at 749.073 kb on - strand, within ABZR87_RS03565at 749.073 kb on - strand, within ABZR87_RS03565at 749.073 kb on - strand, within ABZR87_RS03565at 749.073 kb on - strand, within ABZR87_RS03565at 749.157 kb on - strand, within ABZR87_RS03565at 749.157 kb on - strand, within ABZR87_RS03565at 749.224 kb on - strand, within ABZR87_RS03565at 749.381 kb on + strandat 749.381 kb on + strandat 749.381 kb on + strandat 749.663 kb on + strand, within ABZR87_RS03570at 749.664 kb on - strand, within ABZR87_RS03570at 749.675 kb on + strand, within ABZR87_RS03570at 749.675 kb on + strand, within ABZR87_RS03570at 749.675 kb on + strand, within ABZR87_RS03570at 749.676 kb on - strand, within ABZR87_RS03570at 749.676 kb on - strand, within ABZR87_RS03570at 749.676 kb on - strand, within ABZR87_RS03570at 749.676 kb on - strand, within ABZR87_RS03570at 749.676 kb on - strand, within ABZR87_RS03570at 749.754 kb on + strand, within ABZR87_RS03570at 749.755 kb on - strand, within ABZR87_RS03570at 749.775 kb on + strand, within ABZR87_RS03570at 749.776 kb on - strand, within ABZR87_RS03570at 749.776 kb on - strand, within ABZR87_RS03570at 749.776 kb on - strand, within ABZR87_RS03570at 749.776 kb on - strand, within ABZR87_RS03570at 750.353 kb on + strand, within ABZR87_RS03570at 750.353 kb on + strand, within ABZR87_RS03570at 750.353 kb on + strand, within ABZR87_RS03570at 750.353 kb on + strand, within ABZR87_RS03570at 750.353 kb on + strand, within ABZR87_RS03570at 750.354 kb on - strand, within ABZR87_RS03570at 750.354 kb on - strand, within ABZR87_RS03570at 750.354 kb on - strand, within ABZR87_RS03570at 750.371 kb on + strand, within ABZR87_RS03570at 750.371 kb on + strand, within ABZR87_RS03570at 750.372 kb on - strand, within ABZR87_RS03570at 750.372 kb on - strand, within ABZR87_RS03570at 750.710 kb on - strand, within ABZR87_RS03570at 750.845 kb on + strandat 750.845 kb on + strandat 750.845 kb on + strandat 750.845 kb on + strandat 750.845 kb on + strandat 750.845 kb on + strandat 750.846 kb on - strandat 750.846 kb on - strandat 750.846 kb on - strandat 750.846 kb on - strandat 750.846 kb on - strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.875 kb on + strandat 750.876 kb on - strandat 750.876 kb on - strandat 750.948 kb on + strandat 750.948 kb on + strandat 750.949 kb on - strandat 750.949 kb on - strandat 750.949 kb on - strandat 750.949 kb on - strandat 751.036 kb on + strand, within ABZR87_RS03575at 751.036 kb on + strand, within ABZR87_RS03575at 751.036 kb on + strand, within ABZR87_RS03575at 751.036 kb on + strand, within ABZR87_RS03575at 751.036 kb on + strand, within ABZR87_RS03575at 751.037 kb on - strand, within ABZR87_RS03575at 751.037 kb on - strand, within ABZR87_RS03575at 751.037 kb on - strand, within ABZR87_RS03575at 751.037 kb on - strand, within ABZR87_RS03575at 751.037 kb on - strand, within ABZR87_RS03575at 751.110 kb on + strand, within ABZR87_RS03575at 751.110 kb on + strand, within ABZR87_RS03575at 751.111 kb on - strand, within ABZR87_RS03575at 751.111 kb on - strand, within ABZR87_RS03575at 751.111 kb on - strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.125 kb on + strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.126 kb on - strand, within ABZR87_RS03575at 751.314 kb on + strand, within ABZR87_RS03575at 751.314 kb on + strand, within ABZR87_RS03575at 751.315 kb on - strand, within ABZR87_RS03575at 751.315 kb on - strand, within ABZR87_RS03575at 751.546 kb on + strandat 751.547 kb on - strandat 751.547 kb on - strandat 751.547 kb on - strandat 751.602 kb on + strandat 751.602 kb on + strandat 751.602 kb on + strandat 751.602 kb on + strandat 751.603 kb on - strandat 751.664 kb on + strandat 751.664 kb on + strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.695 kb on - strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.722 kb on + strandat 751.723 kb on - strandat 751.723 kb on - strandat 751.723 kb on - strandat 751.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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748,557 + ABZR87_RS03560 0.87 +1.1
748,557 + ABZR87_RS03560 0.87 -0.1
748,557 + ABZR87_RS03560 0.87 -0.2
748,558 - ABZR87_RS03560 0.88 -1.6
748,558 - ABZR87_RS03560 0.88 -0.2
748,558 - ABZR87_RS03560 0.88 +1.9
748,630 + +1.1
748,630 + +2.1
748,630 + -0.3
748,630 + +1.7
748,630 + +0.7
748,630 + +0.4
748,630 + +0.4
748,631 - -0.1
748,631 - -0.9
748,631 - -0.3
748,631 - +0.2
748,631 - -0.3
748,631 - -1.1
748,631 - +1.1
748,686 + -0.0
748,686 + +0.4
748,687 - -0.6
748,687 - -0.4
748,687 - -1.6
748,935 + ABZR87_RS03565 0.28 +1.0
749,016 - ABZR87_RS03565 0.42 -1.0
749,021 + ABZR87_RS03565 0.43 -0.4
749,021 + ABZR87_RS03565 0.43 -2.4
749,021 + ABZR87_RS03565 0.43 -0.2
749,021 + ABZR87_RS03565 0.43 +0.4
749,021 + ABZR87_RS03565 0.43 -0.2
749,022 - ABZR87_RS03565 0.43 -0.4
749,022 - ABZR87_RS03565 0.43 -0.7
749,022 - ABZR87_RS03565 0.43 -1.7
749,022 - ABZR87_RS03565 0.43 +0.6
749,022 - ABZR87_RS03565 0.43 -1.4
749,022 - ABZR87_RS03565 0.43 +0.8
749,022 - ABZR87_RS03565 0.43 -0.4
749,022 - ABZR87_RS03565 0.43 -1.6
749,072 + ABZR87_RS03565 0.51 -0.4
749,072 + ABZR87_RS03565 0.51 +0.1
749,072 + ABZR87_RS03565 0.51 -0.2
749,072 + ABZR87_RS03565 0.51 -1.3
749,072 + ABZR87_RS03565 0.51 +0.6
749,073 - ABZR87_RS03565 0.51 -0.0
749,073 - ABZR87_RS03565 0.51 -1.3
749,073 - ABZR87_RS03565 0.51 -1.6
749,073 - ABZR87_RS03565 0.51 -0.0
749,157 - ABZR87_RS03565 0.65 +1.3
749,157 - ABZR87_RS03565 0.65 -0.9
749,224 - ABZR87_RS03565 0.76 +0.2
749,381 + +0.9
749,381 + +2.1
749,381 + -0.7
749,663 + ABZR87_RS03570 0.13 +1.3
749,664 - ABZR87_RS03570 0.13 -1.3
749,675 + ABZR87_RS03570 0.14 -0.4
749,675 + ABZR87_RS03570 0.14 +0.1
749,675 + ABZR87_RS03570 0.14 +0.0
749,676 - ABZR87_RS03570 0.14 -0.6
749,676 - ABZR87_RS03570 0.14 -1.0
749,676 - ABZR87_RS03570 0.14 -0.8
749,676 - ABZR87_RS03570 0.14 +0.1
749,676 - ABZR87_RS03570 0.14 +0.4
749,754 + ABZR87_RS03570 0.19 -0.5
749,755 - ABZR87_RS03570 0.19 -2.1
749,775 + ABZR87_RS03570 0.21 -0.1
749,776 - ABZR87_RS03570 0.21 +0.6
749,776 - ABZR87_RS03570 0.21 +0.5
749,776 - ABZR87_RS03570 0.21 -0.7
749,776 - ABZR87_RS03570 0.21 -0.9
750,353 + ABZR87_RS03570 0.60 -0.9
750,353 + ABZR87_RS03570 0.60 +0.4
750,353 + ABZR87_RS03570 0.60 +0.0
750,353 + ABZR87_RS03570 0.60 -1.8
750,353 + ABZR87_RS03570 0.60 -0.5
750,354 - ABZR87_RS03570 0.60 +0.5
750,354 - ABZR87_RS03570 0.60 +0.8
750,354 - ABZR87_RS03570 0.60 +0.1
750,371 + ABZR87_RS03570 0.61 -0.2
750,371 + ABZR87_RS03570 0.61 -0.3
750,372 - ABZR87_RS03570 0.61 +0.4
750,372 - ABZR87_RS03570 0.61 -1.1
750,710 - ABZR87_RS03570 0.84 +1.5
750,845 + -0.4
750,845 + -0.1
750,845 + +0.3
750,845 + -1.1
750,845 + -0.6
750,845 + -0.7
750,846 - -0.8
750,846 - +0.8
750,846 - -0.4
750,846 - +0.4
750,846 - +0.1
750,875 + -1.2
750,875 + +0.7
750,875 + -1.3
750,875 + -2.7
750,875 + -0.8
750,875 + +0.1
750,875 + -2.6
750,876 - +0.3
750,876 - +1.0
750,948 + -0.1
750,948 + +0.4
750,949 - -0.1
750,949 - -0.2
750,949 - -0.2
750,949 - -0.4
751,036 + ABZR87_RS03575 0.15 +0.5
751,036 + ABZR87_RS03575 0.15 +0.4
751,036 + ABZR87_RS03575 0.15 +1.2
751,036 + ABZR87_RS03575 0.15 -2.3
751,036 + ABZR87_RS03575 0.15 -0.3
751,037 - ABZR87_RS03575 0.15 -0.7
751,037 - ABZR87_RS03575 0.15 -0.2
751,037 - ABZR87_RS03575 0.15 +0.1
751,037 - ABZR87_RS03575 0.15 +0.2
751,037 - ABZR87_RS03575 0.15 -0.4
751,110 + ABZR87_RS03575 0.27 +0.5
751,110 + ABZR87_RS03575 0.27 -0.3
751,111 - ABZR87_RS03575 0.27 +0.6
751,111 - ABZR87_RS03575 0.27 +0.4
751,111 - ABZR87_RS03575 0.27 +0.8
751,125 + ABZR87_RS03575 0.30 -0.3
751,125 + ABZR87_RS03575 0.30 +0.4
751,125 + ABZR87_RS03575 0.30 -0.2
751,125 + ABZR87_RS03575 0.30 -0.2
751,125 + ABZR87_RS03575 0.30 +0.8
751,125 + ABZR87_RS03575 0.30 +0.3
751,125 + ABZR87_RS03575 0.30 +1.9
751,126 - ABZR87_RS03575 0.30 +0.5
751,126 - ABZR87_RS03575 0.30 -0.6
751,126 - ABZR87_RS03575 0.30 +0.9
751,126 - ABZR87_RS03575 0.30 -0.6
751,126 - ABZR87_RS03575 0.30 -0.6
751,126 - ABZR87_RS03575 0.30 -0.0
751,314 + ABZR87_RS03575 0.61 -0.3
751,314 + ABZR87_RS03575 0.61 -0.1
751,315 - ABZR87_RS03575 0.61 +0.5
751,315 - ABZR87_RS03575 0.61 -0.4
751,546 + +0.2
751,547 - +1.2
751,547 - -1.2
751,547 - +0.3
751,602 + -0.2
751,602 + -0.5
751,602 + +2.3
751,602 + +0.8
751,603 - +0.5
751,664 + -0.6
751,664 + -1.1
751,665 - -0.4
751,665 - +1.0
751,665 - +1.9
751,665 - -0.9
751,695 - -1.2
751,722 + -2.1
751,722 + -1.5
751,722 + +1.1
751,722 + -0.4
751,722 + -0.5
751,722 + -0.7
751,722 + +0.1
751,723 - -0.1
751,723 - -2.5
751,723 - -0.2
751,723 - +1.1

Or see this region's nucleotide sequence