Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03265

Experiment: rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03260 and ABZR87_RS03265 are separated by 325 nucleotidesABZR87_RS03265 and ABZR87_RS03270 are separated by 71 nucleotidesABZR87_RS03270 and ABZR87_RS03275 are separated by 6 nucleotides ABZR87_RS03260: ABZR87_RS03260 - histidinol-phosphate transaminase, at 686,895 to 687,962 _RS03260 ABZR87_RS03265: ABZR87_RS03265 - high-potential iron-sulfur protein, at 688,288 to 688,599 _RS03265 ABZR87_RS03270: ABZR87_RS03270 - two-component system response regulator KdpE, at 688,671 to 689,375 _RS03270 ABZR87_RS03275: ABZR87_RS03275 - tripartite tricarboxylate transporter substrate binding protein, at 689,382 to 690,380 _RS03275 Position (kb) 688 689Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 687.324 kb on + strand, within ABZR87_RS03260at 687.324 kb on + strand, within ABZR87_RS03260at 687.324 kb on + strand, within ABZR87_RS03260at 687.324 kb on + strand, within ABZR87_RS03260at 687.324 kb on + strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.325 kb on - strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.453 kb on + strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.454 kb on - strand, within ABZR87_RS03260at 687.669 kb on + strand, within ABZR87_RS03260at 687.669 kb on + strand, within ABZR87_RS03260at 687.670 kb on - strand, within ABZR87_RS03260at 687.670 kb on - strand, within ABZR87_RS03260at 687.684 kb on + strand, within ABZR87_RS03260at 687.684 kb on + strand, within ABZR87_RS03260at 687.684 kb on + strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.934 kb on + strandat 687.935 kb on - strandat 687.935 kb on - strandat 687.935 kb on - strandat 687.960 kb on + strandat 687.961 kb on - strandat 687.961 kb on - strandat 687.961 kb on - strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.965 kb on - strandat 687.965 kb on - strandat 687.965 kb on - strandat 688.108 kb on + strandat 688.108 kb on + strandat 688.109 kb on - strandat 688.109 kb on - strandat 688.122 kb on - strandat 688.122 kb on - strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.219 kb on - strandat 688.420 kb on + strand, within ABZR87_RS03265at 688.421 kb on - strand, within ABZR87_RS03265at 688.501 kb on + strand, within ABZR87_RS03265at 688.501 kb on + strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 689.268 kb on + strand, within ABZR87_RS03270at 689.268 kb on + strand, within ABZR87_RS03270at 689.269 kb on - strand, within ABZR87_RS03270at 689.269 kb on - strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.373 kb on + strandat 689.373 kb on + strandat 689.374 kb on - strandat 689.374 kb on - strandat 689.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB
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687,324 + ABZR87_RS03260 0.40 -0.4
687,324 + ABZR87_RS03260 0.40 -0.6
687,324 + ABZR87_RS03260 0.40 -1.0
687,324 + ABZR87_RS03260 0.40 +0.6
687,324 + ABZR87_RS03260 0.40 -2.2
687,325 - ABZR87_RS03260 0.40 +0.3
687,325 - ABZR87_RS03260 0.40 +0.1
687,325 - ABZR87_RS03260 0.40 +0.3
687,325 - ABZR87_RS03260 0.40 -0.6
687,325 - ABZR87_RS03260 0.40 +0.2
687,325 - ABZR87_RS03260 0.40 -0.1
687,453 + ABZR87_RS03260 0.52 +0.2
687,453 + ABZR87_RS03260 0.52 -0.3
687,453 + ABZR87_RS03260 0.52 +0.9
687,453 + ABZR87_RS03260 0.52 -0.2
687,453 + ABZR87_RS03260 0.52 -0.8
687,453 + ABZR87_RS03260 0.52 -0.2
687,453 + ABZR87_RS03260 0.52 -1.0
687,453 + ABZR87_RS03260 0.52 +0.9
687,453 + ABZR87_RS03260 0.52 -1.5
687,454 - ABZR87_RS03260 0.52 +2.5
687,454 - ABZR87_RS03260 0.52 -0.2
687,454 - ABZR87_RS03260 0.52 -0.2
687,454 - ABZR87_RS03260 0.52 -0.1
687,454 - ABZR87_RS03260 0.52 -2.4
687,454 - ABZR87_RS03260 0.52 +0.3
687,454 - ABZR87_RS03260 0.52 -0.8
687,454 - ABZR87_RS03260 0.52 +3.2
687,454 - ABZR87_RS03260 0.52 -2.5
687,454 - ABZR87_RS03260 0.52 +2.5
687,454 - ABZR87_RS03260 0.52 -0.6
687,454 - ABZR87_RS03260 0.52 -0.6
687,669 + ABZR87_RS03260 0.72 +2.4
687,669 + ABZR87_RS03260 0.72 +0.1
687,670 - ABZR87_RS03260 0.73 +1.1
687,670 - ABZR87_RS03260 0.73 +0.2
687,684 + ABZR87_RS03260 0.74 -0.9
687,684 + ABZR87_RS03260 0.74 -0.3
687,684 + ABZR87_RS03260 0.74 +0.5
687,685 - ABZR87_RS03260 0.74 -0.3
687,685 - ABZR87_RS03260 0.74 +0.6
687,685 - ABZR87_RS03260 0.74 -2.4
687,685 - ABZR87_RS03260 0.74 -0.9
687,685 - ABZR87_RS03260 0.74 -0.5
687,685 - ABZR87_RS03260 0.74 -0.7
687,685 - ABZR87_RS03260 0.74 +0.8
687,685 - ABZR87_RS03260 0.74 +0.5
687,685 - ABZR87_RS03260 0.74 +0.4
687,934 + +0.9
687,935 - +0.1
687,935 - -0.2
687,935 - -0.8
687,960 + -0.1
687,961 - -1.0
687,961 - -0.1
687,961 - -0.7
687,964 + -1.2
687,964 + +0.3
687,964 + -1.5
687,964 + -0.1
687,964 + -0.1
687,965 - +1.1
687,965 - -0.6
687,965 - -0.5
688,108 + +0.0
688,108 + -1.5
688,109 - +0.1
688,109 - -0.2
688,122 - -0.5
688,122 - +1.2
688,139 + +0.9
688,139 + +0.7
688,139 + +0.8
688,139 + +1.1
688,219 - +0.7
688,420 + ABZR87_RS03265 0.42 +0.2
688,421 - ABZR87_RS03265 0.43 -1.1
688,501 + ABZR87_RS03265 0.68 -1.3
688,501 + ABZR87_RS03265 0.68 -1.9
688,502 - ABZR87_RS03265 0.69 -0.8
688,502 - ABZR87_RS03265 0.69 +0.2
688,502 - ABZR87_RS03265 0.69 +2.2
688,502 - ABZR87_RS03265 0.69 -1.3
688,667 + -0.2
688,667 + +2.5
688,667 + +0.4
688,667 + +0.5
688,667 + -0.5
688,667 + +0.6
688,668 - -0.1
688,668 - +0.3
688,668 - -1.6
688,668 - +0.2
688,668 - -0.9
688,668 - -0.1
688,668 - +0.8
688,986 + ABZR87_RS03270 0.45 -0.7
688,986 + ABZR87_RS03270 0.45 +0.1
688,986 + ABZR87_RS03270 0.45 +0.4
688,986 + ABZR87_RS03270 0.45 -0.8
688,986 + ABZR87_RS03270 0.45 -1.0
688,986 + ABZR87_RS03270 0.45 -2.0
688,987 - ABZR87_RS03270 0.45 -1.1
688,987 - ABZR87_RS03270 0.45 -2.2
688,987 - ABZR87_RS03270 0.45 +1.0
688,987 - ABZR87_RS03270 0.45 -0.3
689,268 + ABZR87_RS03270 0.85 -2.3
689,268 + ABZR87_RS03270 0.85 -0.7
689,269 - ABZR87_RS03270 0.85 -0.9
689,269 - ABZR87_RS03270 0.85 -1.0
689,280 + ABZR87_RS03270 0.86 +0.3
689,280 + ABZR87_RS03270 0.86 -0.2
689,280 + ABZR87_RS03270 0.86 +0.0
689,280 + ABZR87_RS03270 0.86 -0.2
689,280 + ABZR87_RS03270 0.86 +4.5
689,280 + ABZR87_RS03270 0.86 +0.7
689,280 + ABZR87_RS03270 0.86 +0.6
689,280 + ABZR87_RS03270 0.86 +3.2
689,280 + ABZR87_RS03270 0.86 +0.5
689,280 + ABZR87_RS03270 0.86 -0.4
689,281 - ABZR87_RS03270 0.87 +1.1
689,281 - ABZR87_RS03270 0.87 +0.5
689,281 - ABZR87_RS03270 0.87 +1.5
689,281 - ABZR87_RS03270 0.87 -1.9
689,281 - ABZR87_RS03270 0.87 -1.5
689,281 - ABZR87_RS03270 0.87 +1.3
689,281 - ABZR87_RS03270 0.87 +0.2
689,281 - ABZR87_RS03270 0.87 -1.0
689,281 - ABZR87_RS03270 0.87 +0.6
689,281 - ABZR87_RS03270 0.87 +1.5
689,281 - ABZR87_RS03270 0.87 -0.1
689,281 - ABZR87_RS03270 0.87 +0.5
689,281 - ABZR87_RS03270 0.87 -0.1
689,373 + +0.6
689,373 + +6.1
689,374 - -0.3
689,374 - -0.0
689,432 - +1.9

Or see this region's nucleotide sequence