Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02370 and ABZR87_RS02375 are separated by 150 nucleotides ABZR87_RS02375 and ABZR87_RS02380 are separated by 37 nucleotides ABZR87_RS02380 and ABZR87_RS02385 overlap by 1 nucleotides ABZR87_RS02385 and ABZR87_RS02390 are separated by 245 nucleotides
ABZR87_RS02370: ABZR87_RS02370 - glutathione S-transferase N-terminal domain-containing protein, at 506,429 to 507,040
_RS02370
ABZR87_RS02375: ABZR87_RS02375 - cytochrome c1, at 507,191 to 507,934
_RS02375
ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375
_RS02380
ABZR87_RS02385: ABZR87_RS02385 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 509,375 to 509,983
_RS02385
ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657
_RS02390
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 507.087 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.144 kb on - strand at 507.144 kb on - strand at 507.144 kb on - strand at 507.166 kb on - strand at 507.193 kb on - strand at 507.211 kb on - strand at 507.264 kb on - strand at 507.264 kb on - strand at 507.321 kb on + strand, within ABZR87_RS02375 at 507.321 kb on + strand, within ABZR87_RS02375 at 507.321 kb on + strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.351 kb on + strand, within ABZR87_RS02375 at 507.352 kb on - strand, within ABZR87_RS02375 at 507.355 kb on - strand, within ABZR87_RS02375 at 507.441 kb on + strand, within ABZR87_RS02375 at 507.543 kb on + strand, within ABZR87_RS02375 at 507.543 kb on + strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.564 kb on + strand, within ABZR87_RS02375 at 507.564 kb on + strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.748 kb on - strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.970 kb on + strand at 507.971 kb on - strand at 508.060 kb on + strand at 508.060 kb on + strand at 508.061 kb on - strand at 508.123 kb on + strand, within ABZR87_RS02380 at 508.124 kb on - strand, within ABZR87_RS02380 at 508.441 kb on + strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.613 kb on - strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.616 kb on - strand, within ABZR87_RS02380 at 508.617 kb on - strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.922 kb on - strand, within ABZR87_RS02380 at 508.995 kb on - strand, within ABZR87_RS02380 at 508.995 kb on - strand, within ABZR87_RS02380 at 509.000 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.009 kb on - strand, within ABZR87_RS02380 at 509.035 kb on + strand, within ABZR87_RS02380 at 509.035 kb on + strand, within ABZR87_RS02380 at 509.036 kb on - strand, within ABZR87_RS02380 at 509.036 kb on - strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.077 kb on + strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.078 kb on - strand, within ABZR87_RS02380 at 509.131 kb on + strand, within ABZR87_RS02380 at 509.131 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.176 kb on + strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.177 kb on - strand, within ABZR87_RS02380 at 509.248 kb on + strand at 509.273 kb on + strand at 509.275 kb on + strand at 509.275 kb on + strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.276 kb on - strand at 509.278 kb on + strand at 509.279 kb on - strand at 509.279 kb on - strand at 509.398 kb on + strand at 509.433 kb on + strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.434 kb on - strand at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.626 kb on + strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.627 kb on - strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.661 kb on + strand, within ABZR87_RS02385 at 509.662 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.835 kb on - strand, within ABZR87_RS02385 at 509.942 kb on + strand at 509.942 kb on + strand at 509.942 kb on + strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 509.943 kb on - strand at 510.011 kb on + strand at 510.011 kb on + strand at 510.012 kb on - strand at 510.046 kb on - strand at 510.046 kb on - strand at 510.088 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.090 kb on + strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.091 kb on - strand at 510.185 kb on + strand at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.369 kb on + strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390 at 510.370 kb on - strand, within ABZR87_RS02390
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 507,087 - -0.6 507,087 - -0.0 507,087 - -1.0 507,144 - +1.7 507,144 - -0.1 507,144 - +0.1 507,166 - -0.0 507,193 - -1.0 507,211 - +0.5 507,264 - -2.1 507,264 - -1.1 507,321 + ABZR87_RS02375 0.17 +1.5 507,321 + ABZR87_RS02375 0.17 +0.7 507,321 + ABZR87_RS02375 0.17 +1.0 507,322 - ABZR87_RS02375 0.18 +0.2 507,322 - ABZR87_RS02375 0.18 -1.7 507,322 - ABZR87_RS02375 0.18 +0.8 507,322 - ABZR87_RS02375 0.18 -1.6 507,322 - ABZR87_RS02375 0.18 -0.2 507,322 - ABZR87_RS02375 0.18 -0.8 507,351 + ABZR87_RS02375 0.22 +0.6 507,352 - ABZR87_RS02375 0.22 -1.3 507,355 - ABZR87_RS02375 0.22 -1.2 507,441 + ABZR87_RS02375 0.34 -0.3 507,543 + ABZR87_RS02375 0.47 -1.3 507,543 + ABZR87_RS02375 0.47 -1.1 507,544 - ABZR87_RS02375 0.47 -1.8 507,544 - ABZR87_RS02375 0.47 -0.6 507,544 - ABZR87_RS02375 0.47 -1.6 507,544 - ABZR87_RS02375 0.47 -0.5 507,558 + ABZR87_RS02375 0.49 -0.7 507,558 + ABZR87_RS02375 0.49 -0.3 507,558 + ABZR87_RS02375 0.49 +0.6 507,558 + ABZR87_RS02375 0.49 +3.5 507,558 + ABZR87_RS02375 0.49 -0.3 507,559 - ABZR87_RS02375 0.49 -0.0 507,559 - ABZR87_RS02375 0.49 -1.7 507,559 - ABZR87_RS02375 0.49 +0.2 507,559 - ABZR87_RS02375 0.49 -1.2 507,564 + ABZR87_RS02375 0.50 +0.4 507,564 + ABZR87_RS02375 0.50 +0.5 507,565 - ABZR87_RS02375 0.50 -2.0 507,565 - ABZR87_RS02375 0.50 -0.2 507,565 - ABZR87_RS02375 0.50 -0.6 507,565 - ABZR87_RS02375 0.50 +0.2 507,565 - ABZR87_RS02375 0.50 +0.6 507,747 + ABZR87_RS02375 0.75 +1.5 507,747 + ABZR87_RS02375 0.75 -1.0 507,747 + ABZR87_RS02375 0.75 -2.4 507,747 + ABZR87_RS02375 0.75 -2.0 507,747 + ABZR87_RS02375 0.75 -0.2 507,748 - ABZR87_RS02375 0.75 -2.1 507,783 + ABZR87_RS02375 0.80 -0.3 507,783 + ABZR87_RS02375 0.80 -1.0 507,783 + ABZR87_RS02375 0.80 -1.5 507,784 - ABZR87_RS02375 0.80 -0.4 507,784 - ABZR87_RS02375 0.80 -0.7 507,784 - ABZR87_RS02375 0.80 -2.1 507,784 - ABZR87_RS02375 0.80 -1.3 507,784 - ABZR87_RS02375 0.80 -1.3 507,970 + -1.9 507,971 - +0.2 508,060 + -2.2 508,060 + -1.5 508,061 - -1.0 508,123 + ABZR87_RS02380 0.11 -1.5 508,124 - ABZR87_RS02380 0.11 +1.9 508,441 + ABZR87_RS02380 0.33 +0.3 508,442 - ABZR87_RS02380 0.33 -1.3 508,442 - ABZR87_RS02380 0.33 -1.5 508,528 + ABZR87_RS02380 0.40 -0.1 508,528 + ABZR87_RS02380 0.40 +0.6 508,529 - ABZR87_RS02380 0.40 -2.3 508,529 - ABZR87_RS02380 0.40 -0.3 508,613 - ABZR87_RS02380 0.46 +0.1 508,615 + ABZR87_RS02380 0.46 +0.7 508,615 + ABZR87_RS02380 0.46 -1.6 508,616 - ABZR87_RS02380 0.46 -0.2 508,617 - ABZR87_RS02380 0.46 +1.5 508,810 + ABZR87_RS02380 0.60 -1.4 508,810 + ABZR87_RS02380 0.60 -0.4 508,810 + ABZR87_RS02380 0.60 -1.2 508,810 + ABZR87_RS02380 0.60 +2.5 508,810 + ABZR87_RS02380 0.60 -0.9 508,810 + ABZR87_RS02380 0.60 -0.3 508,810 + ABZR87_RS02380 0.60 -1.1 508,810 + ABZR87_RS02380 0.60 +1.4 508,811 - ABZR87_RS02380 0.60 -0.5 508,811 - ABZR87_RS02380 0.60 -0.1 508,811 - ABZR87_RS02380 0.60 -0.4 508,811 - ABZR87_RS02380 0.60 -0.6 508,811 - ABZR87_RS02380 0.60 +0.6 508,811 - ABZR87_RS02380 0.60 -0.5 508,895 - ABZR87_RS02380 0.66 +1.1 508,895 - ABZR87_RS02380 0.66 +0.1 508,895 - ABZR87_RS02380 0.66 -0.6 508,921 + ABZR87_RS02380 0.68 +0.3 508,921 + ABZR87_RS02380 0.68 +0.0 508,922 - ABZR87_RS02380 0.68 -0.7 508,995 - ABZR87_RS02380 0.73 -0.2 508,995 - ABZR87_RS02380 0.73 -0.5 509,000 - ABZR87_RS02380 0.73 +1.2 509,009 - ABZR87_RS02380 0.74 -1.8 509,009 - ABZR87_RS02380 0.74 +0.0 509,009 - ABZR87_RS02380 0.74 -0.0 509,035 + ABZR87_RS02380 0.76 -0.9 509,035 + ABZR87_RS02380 0.76 -1.1 509,036 - ABZR87_RS02380 0.76 +1.2 509,036 - ABZR87_RS02380 0.76 +1.0 509,077 + ABZR87_RS02380 0.79 -1.1 509,077 + ABZR87_RS02380 0.79 +0.5 509,077 + ABZR87_RS02380 0.79 -1.5 509,077 + ABZR87_RS02380 0.79 -1.6 509,077 + ABZR87_RS02380 0.79 -1.1 509,077 + ABZR87_RS02380 0.79 -1.0 509,078 - ABZR87_RS02380 0.79 -0.9 509,078 - ABZR87_RS02380 0.79 +0.9 509,078 - ABZR87_RS02380 0.79 -0.3 509,131 + ABZR87_RS02380 0.83 -0.4 509,131 + ABZR87_RS02380 0.83 -2.2 509,176 + ABZR87_RS02380 0.86 +0.2 509,176 + ABZR87_RS02380 0.86 -0.7 509,176 + ABZR87_RS02380 0.86 -0.9 509,176 + ABZR87_RS02380 0.86 -2.7 509,177 - ABZR87_RS02380 0.86 -1.3 509,177 - ABZR87_RS02380 0.86 -0.5 509,177 - ABZR87_RS02380 0.86 +0.2 509,177 - ABZR87_RS02380 0.86 +0.5 509,177 - ABZR87_RS02380 0.86 -0.8 509,177 - ABZR87_RS02380 0.86 -0.6 509,177 - ABZR87_RS02380 0.86 +1.3 509,177 - ABZR87_RS02380 0.86 -0.6 509,177 - ABZR87_RS02380 0.86 -2.1 509,177 - ABZR87_RS02380 0.86 -0.6 509,248 + -1.8 509,273 + -2.0 509,275 + -1.3 509,275 + -2.0 509,276 - +0.2 509,276 - -1.2 509,276 - -2.2 509,276 - -0.5 509,276 - +0.1 509,278 + -0.2 509,279 - -1.4 509,279 - -0.3 509,398 + -1.4 509,433 + +1.3 509,434 - -1.0 509,434 - +0.9 509,434 - -1.6 509,434 - -0.6 509,434 - -2.4 509,434 - -1.1 509,626 + ABZR87_RS02385 0.41 -0.5 509,626 + ABZR87_RS02385 0.41 -0.6 509,626 + ABZR87_RS02385 0.41 -0.6 509,627 - ABZR87_RS02385 0.41 -0.7 509,627 - ABZR87_RS02385 0.41 -2.3 509,661 + ABZR87_RS02385 0.47 +0.3 509,661 + ABZR87_RS02385 0.47 -2.4 509,661 + ABZR87_RS02385 0.47 -1.6 509,661 + ABZR87_RS02385 0.47 -1.3 509,662 - ABZR87_RS02385 0.47 +1.0 509,835 - ABZR87_RS02385 0.76 +2.2 509,835 - ABZR87_RS02385 0.76 +1.9 509,942 + -0.9 509,942 + +0.8 509,942 + -1.2 509,943 - -0.3 509,943 - +0.3 509,943 - -1.1 509,943 - +0.1 509,943 - -0.4 510,011 + -1.7 510,011 + -0.5 510,012 - +1.1 510,046 - +2.0 510,046 - +0.5 510,088 + -1.1 510,090 + +0.3 510,090 + -1.7 510,090 + +0.1 510,091 - +1.4 510,091 - -1.0 510,091 - +0.0 510,091 - +2.1 510,185 + -0.1 510,369 + ABZR87_RS02390 0.33 -1.0 510,369 + ABZR87_RS02390 0.33 -1.4 510,369 + ABZR87_RS02390 0.33 -0.2 510,369 + ABZR87_RS02390 0.33 -0.1 510,369 + ABZR87_RS02390 0.33 -0.3 510,370 - ABZR87_RS02390 0.33 -0.1 510,370 - ABZR87_RS02390 0.33 -0.4 510,370 - ABZR87_RS02390 0.33 +0.8 510,370 - ABZR87_RS02390 0.33 -1.0 510,370 - ABZR87_RS02390 0.33 +2.5 510,370 - ABZR87_RS02390 0.33 -0.7 510,370 - ABZR87_RS02390 0.33 -0.5 510,370 - ABZR87_RS02390 0.33 -0.8
Or see this region's nucleotide sequence