Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02060 and ABZR87_RS02065 are separated by 262 nucleotides ABZR87_RS02065 and ABZR87_RS02070 are separated by 178 nucleotides ABZR87_RS02070 and ABZR87_RS02075 are separated by 114 nucleotides
ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250
_RS02060
ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700
_RS02065
ABZR87_RS02070: ABZR87_RS02070 - 5S ribosomal RNA, at 445,879 to 445,991
_RS02070
ABZR87_RS02075: ABZR87_RS02075 - 23S ribosomal RNA, at 446,106 to 448,984
_RS02075
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.590 kb on + strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.591 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.683 kb on - strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.820 kb on + strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.821 kb on - strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.831 kb on + strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.832 kb on - strand, within ABZR87_RS02060 at 443.875 kb on + strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 443.876 kb on - strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.084 kb on + strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.085 kb on - strand, within ABZR87_RS02060 at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.336 kb on + strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.337 kb on - strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.365 kb on + strand at 444.366 kb on - strand at 444.402 kb on + strand at 444.465 kb on + strand at 444.465 kb on + strand at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.855 kb on + strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 444.856 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.356 kb on + strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.506 kb on + strand, within ABZR87_RS02065 at 445.528 kb on - strand, within ABZR87_RS02065 at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.722 kb on + strand at 445.722 kb on + strand at 445.722 kb on + strand at 446.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 443,590 + ABZR87_RS02060 0.45 -0.1 443,590 + ABZR87_RS02060 0.45 +0.7 443,590 + ABZR87_RS02060 0.45 +0.1 443,591 - ABZR87_RS02060 0.45 -0.8 443,591 - ABZR87_RS02060 0.45 +1.0 443,591 - ABZR87_RS02060 0.45 -0.8 443,591 - ABZR87_RS02060 0.45 +1.1 443,683 - ABZR87_RS02060 0.53 -0.5 443,683 - ABZR87_RS02060 0.53 +2.5 443,820 + ABZR87_RS02060 0.64 +0.3 443,820 + ABZR87_RS02060 0.64 +2.3 443,821 - ABZR87_RS02060 0.64 -0.1 443,821 - ABZR87_RS02060 0.64 -0.3 443,821 - ABZR87_RS02060 0.64 -0.5 443,831 + ABZR87_RS02060 0.65 -0.3 443,831 + ABZR87_RS02060 0.65 +1.7 443,831 + ABZR87_RS02060 0.65 +1.8 443,831 + ABZR87_RS02060 0.65 -0.4 443,831 + ABZR87_RS02060 0.65 +0.3 443,831 + ABZR87_RS02060 0.65 +1.2 443,831 + ABZR87_RS02060 0.65 +0.6 443,831 + ABZR87_RS02060 0.65 -0.2 443,831 + ABZR87_RS02060 0.65 +0.1 443,832 - ABZR87_RS02060 0.65 +0.6 443,832 - ABZR87_RS02060 0.65 -0.6 443,832 - ABZR87_RS02060 0.65 -0.2 443,832 - ABZR87_RS02060 0.65 +0.2 443,832 - ABZR87_RS02060 0.65 -0.2 443,875 + ABZR87_RS02060 0.69 +0.2 443,876 - ABZR87_RS02060 0.69 -0.1 443,876 - ABZR87_RS02060 0.69 -0.0 443,876 - ABZR87_RS02060 0.69 -0.3 443,876 - ABZR87_RS02060 0.69 +1.3 443,876 - ABZR87_RS02060 0.69 +0.4 444,084 + ABZR87_RS02060 0.86 +0.4 444,084 + ABZR87_RS02060 0.86 +0.2 444,084 + ABZR87_RS02060 0.86 -0.0 444,084 + ABZR87_RS02060 0.86 -1.4 444,084 + ABZR87_RS02060 0.86 -0.2 444,084 + ABZR87_RS02060 0.86 +1.0 444,085 - ABZR87_RS02060 0.86 -0.9 444,085 - ABZR87_RS02060 0.86 -1.4 444,336 + +1.0 444,336 + -0.1 444,336 + +0.1 444,336 + +0.8 444,337 - +0.3 444,337 - +0.8 444,337 - -0.4 444,365 + -1.1 444,365 + +0.6 444,365 + -1.1 444,366 - -0.0 444,402 + +0.6 444,465 + -0.1 444,465 + +0.4 444,855 + ABZR87_RS02065 0.29 -1.9 444,855 + ABZR87_RS02065 0.29 +1.4 444,855 + ABZR87_RS02065 0.29 -0.5 444,855 + ABZR87_RS02065 0.29 -0.4 444,855 + ABZR87_RS02065 0.29 +0.3 444,855 + ABZR87_RS02065 0.29 +0.0 444,855 + ABZR87_RS02065 0.29 -0.6 444,855 + ABZR87_RS02065 0.29 -0.8 444,856 - ABZR87_RS02065 0.29 +1.0 444,856 - ABZR87_RS02065 0.29 +0.7 444,856 - ABZR87_RS02065 0.29 +0.1 444,856 - ABZR87_RS02065 0.29 +0.7 445,148 - ABZR87_RS02065 0.53 +0.3 445,148 - ABZR87_RS02065 0.53 +0.4 445,148 - ABZR87_RS02065 0.53 -1.2 445,148 - ABZR87_RS02065 0.53 +0.6 445,172 + ABZR87_RS02065 0.55 -0.1 445,172 + ABZR87_RS02065 0.55 +0.6 445,172 + ABZR87_RS02065 0.55 -0.4 445,173 - ABZR87_RS02065 0.56 +0.2 445,173 - ABZR87_RS02065 0.56 +0.1 445,356 + ABZR87_RS02065 0.71 -1.3 445,357 - ABZR87_RS02065 0.71 -1.2 445,357 - ABZR87_RS02065 0.71 -2.5 445,357 - ABZR87_RS02065 0.71 -1.3 445,393 - ABZR87_RS02065 0.74 -0.2 445,393 - ABZR87_RS02065 0.74 -1.7 445,506 + ABZR87_RS02065 0.84 -0.6 445,528 - ABZR87_RS02065 0.85 -0.1 445,623 + -0.6 445,623 + -0.1 445,623 + -0.3 445,623 + +1.3 445,623 + +1.6 445,624 - -1.0 445,624 - +1.2 445,624 - -1.1 445,624 - -0.1 445,624 - -0.2 445,624 - +0.2 445,624 - +0.9 445,624 - -0.7 445,662 + -0.1 445,662 + +1.7 445,662 + -0.2 445,662 + -1.3 445,663 - +0.8 445,663 - +0.7 445,663 - -0.2 445,663 - -1.9 445,663 - -0.1 445,694 + +0.1 445,694 + -0.2 445,694 + +0.0 445,698 + +0.7 445,698 + -0.3 445,698 + +1.8 445,698 + -0.6 445,698 + -0.4 445,698 + +1.6 445,698 + +1.4 445,698 + +0.3 445,698 + +1.5 445,698 + +1.4 445,698 + +0.5 445,698 + +2.1 445,698 + +1.3 445,698 + +0.9 445,698 + +1.3 445,698 + -0.3 445,698 + +1.3 445,699 - +0.1 445,699 - +0.7 445,699 - +1.0 445,699 - +0.7 445,699 - +2.5 445,699 - +0.5 445,699 - -0.2 445,699 - +0.0 445,699 - +1.2 445,703 - +1.2 445,703 - -1.1 445,703 - +0.0 445,703 - +0.2 445,722 + +0.3 445,722 + -1.1 445,722 + +0.7 446,105 + -0.9
Or see this region's nucleotide sequence