Experiment: rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00695 and ABZR87_RS00700 are separated by 3 nucleotides ABZR87_RS00700 and ABZR87_RS00705 are separated by 52 nucleotides ABZR87_RS00705 and ABZR87_RS00710 are separated by 147 nucleotides
ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992
_RS00695
ABZR87_RS00700: ABZR87_RS00700 - site-2 protease family protein, at 141,996 to 142,715
_RS00700
ABZR87_RS00705: ABZR87_RS00705 - superoxide dismutase [Fe], at 142,768 to 143,346
_RS00705
ABZR87_RS00710: ABZR87_RS00710 - exodeoxyribonuclease VII large subunit, at 143,494 to 144,903
_RS00710
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.417 kb on + strand, within ABZR87_RS00695 at 141.417 kb on + strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.478 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.792 kb on + strand, within ABZR87_RS00695 at 141.793 kb on - strand, within ABZR87_RS00695 at 141.831 kb on + strand, within ABZR87_RS00695 at 141.990 kb on + strand at 141.991 kb on - strand at 141.991 kb on - strand at 141.991 kb on - strand at 142.086 kb on + strand, within ABZR87_RS00700 at 142.086 kb on + strand, within ABZR87_RS00700 at 142.086 kb on + strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.110 kb on + strand, within ABZR87_RS00700 at 142.111 kb on - strand, within ABZR87_RS00700 at 142.117 kb on + strand, within ABZR87_RS00700 at 142.433 kb on + strand, within ABZR87_RS00700 at 142.596 kb on + strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.629 kb on + strand, within ABZR87_RS00700 at 142.629 kb on + strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.639 kb on - strand, within ABZR87_RS00700 at 142.639 kb on - strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 143.244 kb on - strand, within ABZR87_RS00705 at 143.370 kb on - strand at 143.370 kb on - strand at 143.370 kb on - strand at 143.370 kb on - strand at 143.370 kb on - strand at 143.391 kb on + strand at 143.391 kb on + strand at 143.391 kb on + strand at 143.391 kb on + strand at 143.391 kb on + strand at 143.391 kb on + strand at 143.425 kb on + strand at 143.425 kb on + strand at 143.425 kb on + strand at 143.426 kb on - strand at 143.426 kb on - strand at 143.426 kb on - strand at 143.429 kb on + strand at 143.430 kb on - strand at 143.430 kb on - strand at 143.445 kb on + strand at 143.476 kb on + strand at 143.477 kb on - strand at 143.477 kb on - strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.478 kb on + strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.479 kb on - strand at 143.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 2; outgrowth in LB remove 141,417 + ABZR87_RS00695 0.38 -0.8 141,417 + ABZR87_RS00695 0.38 +0.5 141,418 - ABZR87_RS00695 0.38 -0.2 141,418 - ABZR87_RS00695 0.38 -1.3 141,418 - ABZR87_RS00695 0.38 -0.0 141,432 + ABZR87_RS00695 0.40 -0.8 141,432 + ABZR87_RS00695 0.40 -1.4 141,433 - ABZR87_RS00695 0.40 +0.0 141,433 - ABZR87_RS00695 0.40 -1.0 141,477 + ABZR87_RS00695 0.45 +1.0 141,477 + ABZR87_RS00695 0.45 -1.1 141,477 + ABZR87_RS00695 0.45 +0.8 141,478 - ABZR87_RS00695 0.45 +0.6 141,577 - ABZR87_RS00695 0.55 -1.2 141,577 - ABZR87_RS00695 0.55 -0.7 141,660 + ABZR87_RS00695 0.64 -0.1 141,660 + ABZR87_RS00695 0.64 -0.2 141,660 + ABZR87_RS00695 0.64 +0.5 141,661 - ABZR87_RS00695 0.64 +0.3 141,661 - ABZR87_RS00695 0.64 -1.2 141,661 - ABZR87_RS00695 0.64 +2.4 141,669 + ABZR87_RS00695 0.65 +0.2 141,669 + ABZR87_RS00695 0.65 +0.2 141,669 + ABZR87_RS00695 0.65 -0.9 141,669 + ABZR87_RS00695 0.65 -0.3 141,669 + ABZR87_RS00695 0.65 -0.6 141,669 + ABZR87_RS00695 0.65 +3.4 141,669 + ABZR87_RS00695 0.65 +0.3 141,669 + ABZR87_RS00695 0.65 +0.2 141,669 + ABZR87_RS00695 0.65 +1.8 141,669 + ABZR87_RS00695 0.65 -0.2 141,669 + ABZR87_RS00695 0.65 -0.3 141,669 + ABZR87_RS00695 0.65 +0.2 141,669 + ABZR87_RS00695 0.65 -0.4 141,669 + ABZR87_RS00695 0.65 +1.3 141,669 + ABZR87_RS00695 0.65 +0.9 141,670 - ABZR87_RS00695 0.65 -2.3 141,670 - ABZR87_RS00695 0.65 -3.3 141,670 - ABZR87_RS00695 0.65 -1.0 141,670 - ABZR87_RS00695 0.65 -1.7 141,670 - ABZR87_RS00695 0.65 +0.1 141,670 - ABZR87_RS00695 0.65 +0.7 141,670 - ABZR87_RS00695 0.65 +0.2 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 +1.4 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 +0.3 141,670 - ABZR87_RS00695 0.65 -0.3 141,670 - ABZR87_RS00695 0.65 -0.2 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 -1.1 141,670 - ABZR87_RS00695 0.65 +0.1 141,670 - ABZR87_RS00695 0.65 +1.8 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 -1.0 141,690 + ABZR87_RS00695 0.67 -0.4 141,690 + ABZR87_RS00695 0.67 -0.4 141,690 + ABZR87_RS00695 0.67 +0.0 141,690 + ABZR87_RS00695 0.67 -0.3 141,691 - ABZR87_RS00695 0.68 +0.7 141,691 - ABZR87_RS00695 0.68 -0.8 141,792 + ABZR87_RS00695 0.78 -0.0 141,793 - ABZR87_RS00695 0.78 -1.0 141,831 + ABZR87_RS00695 0.83 +0.3 141,990 + +1.7 141,991 - +0.2 141,991 - +0.3 141,991 - +0.3 142,086 + ABZR87_RS00700 0.12 -0.1 142,086 + ABZR87_RS00700 0.12 -0.3 142,086 + ABZR87_RS00700 0.12 +1.1 142,087 - ABZR87_RS00700 0.13 +0.5 142,087 - ABZR87_RS00700 0.13 -1.5 142,087 - ABZR87_RS00700 0.13 -1.1 142,087 - ABZR87_RS00700 0.13 +0.4 142,110 + ABZR87_RS00700 0.16 -0.3 142,111 - ABZR87_RS00700 0.16 -0.6 142,117 + ABZR87_RS00700 0.17 +0.2 142,433 + ABZR87_RS00700 0.61 +0.1 142,596 + ABZR87_RS00700 0.83 +0.4 142,597 - ABZR87_RS00700 0.83 +0.8 142,597 - ABZR87_RS00700 0.83 -0.4 142,597 - ABZR87_RS00700 0.83 +0.2 142,597 - ABZR87_RS00700 0.83 +0.8 142,599 + ABZR87_RS00700 0.84 -0.5 142,599 + ABZR87_RS00700 0.84 -0.1 142,599 + ABZR87_RS00700 0.84 -1.2 142,599 + ABZR87_RS00700 0.84 -0.5 142,599 + ABZR87_RS00700 0.84 -0.6 142,599 + ABZR87_RS00700 0.84 -0.3 142,599 + ABZR87_RS00700 0.84 +0.3 142,599 + ABZR87_RS00700 0.84 -0.0 142,599 + ABZR87_RS00700 0.84 +0.2 142,599 + ABZR87_RS00700 0.84 -0.6 142,600 - ABZR87_RS00700 0.84 -1.6 142,600 - ABZR87_RS00700 0.84 -0.3 142,600 - ABZR87_RS00700 0.84 +3.2 142,629 + ABZR87_RS00700 0.88 +0.0 142,629 + ABZR87_RS00700 0.88 -0.1 142,630 - ABZR87_RS00700 0.88 -0.1 142,630 - ABZR87_RS00700 0.88 -2.3 142,630 - ABZR87_RS00700 0.88 -0.1 142,638 + ABZR87_RS00700 0.89 +1.8 142,638 + ABZR87_RS00700 0.89 -0.1 142,638 + ABZR87_RS00700 0.89 -0.0 142,639 - ABZR87_RS00700 0.89 +0.4 142,639 - ABZR87_RS00700 0.89 -2.5 142,641 + ABZR87_RS00700 0.90 -0.1 142,641 + ABZR87_RS00700 0.90 +0.7 142,641 + ABZR87_RS00700 0.90 -0.8 142,641 + ABZR87_RS00700 0.90 +1.1 142,641 + ABZR87_RS00700 0.90 +0.5 142,641 + ABZR87_RS00700 0.90 -1.1 142,641 + ABZR87_RS00700 0.90 +0.4 142,642 - ABZR87_RS00700 0.90 +0.9 142,642 - ABZR87_RS00700 0.90 +1.0 142,642 - ABZR87_RS00700 0.90 -0.6 142,642 - ABZR87_RS00700 0.90 -0.7 142,642 - ABZR87_RS00700 0.90 +1.6 143,244 - ABZR87_RS00705 0.82 +1.2 143,370 - -0.3 143,370 - +1.6 143,370 - +1.0 143,370 - -1.0 143,370 - +0.4 143,391 + -1.2 143,391 + +1.4 143,391 + +0.8 143,391 + +0.5 143,391 + -0.8 143,391 + -0.3 143,425 + -0.6 143,425 + -0.0 143,425 + -0.8 143,426 - -0.0 143,426 - +0.1 143,426 - +0.5 143,429 + +1.3 143,430 - +0.7 143,430 - +1.2 143,445 + -1.5 143,476 + -0.5 143,477 - +0.2 143,477 - -0.9 143,478 + +0.8 143,478 + -1.1 143,478 + +0.8 143,478 + -1.5 143,478 + -1.2 143,478 + +2.6 143,478 + -0.4 143,478 + -0.4 143,478 + -0.9 143,478 + -0.4 143,479 - +0.1 143,479 - -1.5 143,479 - -1.5 143,479 - -1.0 143,479 - -0.4 143,479 - -0.2 143,479 - +0.1 143,479 - -0.6 143,479 - +0.7 143,479 - +1.6 143,479 - +1.0 143,479 - -0.8 143,634 - -2.0
Or see this region's nucleotide sequence