Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3761 and Rru_A3762 are separated by 135 nucleotides Rru_A3762 and Rru_A3763 overlap by 4 nucleotides Rru_A3763 and Rru_A3764 overlap by 4 nucleotides
Rru_A3761: Rru_A3761 - hypothetical protein (NCBI), at 4,311,862 to 4,313,154
_A3761
Rru_A3762: Rru_A3762 - Peptidase M15D, vanX D-ala-D-ala dipeptidase (NCBI), at 4,313,290 to 4,313,862
_A3762
Rru_A3763: Rru_A3763 - Peptidase M22, glycoprotease (NCBI), at 4,313,859 to 4,314,557
_A3763
Rru_A3764: Rru_A3764 - GCN5-related N-acetyltransferase (NCBI), at 4,314,554 to 4,315,063
_A3764
Position (kb) 4313
4314 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4312.384 kb on + strand, within Rru_A3761 at 4312.384 kb on + strand, within Rru_A3761 at 4312.385 kb on - strand, within Rru_A3761 at 4312.387 kb on + strand, within Rru_A3761 at 4312.387 kb on + strand, within Rru_A3761 at 4312.388 kb on - strand, within Rru_A3761 at 4312.388 kb on - strand, within Rru_A3761 at 4312.388 kb on - strand, within Rru_A3761 at 4312.390 kb on + strand, within Rru_A3761 at 4312.390 kb on + strand, within Rru_A3761 at 4312.390 kb on + strand, within Rru_A3761 at 4312.390 kb on + strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.391 kb on - strand, within Rru_A3761 at 4312.609 kb on + strand, within Rru_A3761 at 4312.610 kb on - strand, within Rru_A3761 at 4312.651 kb on + strand, within Rru_A3761 at 4312.651 kb on + strand, within Rru_A3761 at 4312.651 kb on + strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.652 kb on - strand, within Rru_A3761 at 4312.782 kb on + strand, within Rru_A3761 at 4312.782 kb on + strand, within Rru_A3761 at 4312.783 kb on - strand, within Rru_A3761 at 4312.793 kb on - strand, within Rru_A3761 at 4312.793 kb on - strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.799 kb on + strand, within Rru_A3761 at 4312.800 kb on - strand, within Rru_A3761 at 4312.800 kb on - strand, within Rru_A3761 at 4312.800 kb on - strand, within Rru_A3761 at 4313.341 kb on + strand at 4313.395 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.597 kb on + strand, within Rru_A3762 at 4313.749 kb on + strand, within Rru_A3762
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 4,312,384 + Rru_A3761 0.40 +1.2 4,312,384 + Rru_A3761 0.40 +0.0 4,312,385 - Rru_A3761 0.40 -2.0 4,312,387 + Rru_A3761 0.41 +0.3 4,312,387 + Rru_A3761 0.41 -0.5 4,312,388 - Rru_A3761 0.41 +0.3 4,312,388 - Rru_A3761 0.41 +1.8 4,312,388 - Rru_A3761 0.41 +0.1 4,312,390 + Rru_A3761 0.41 +0.4 4,312,390 + Rru_A3761 0.41 -1.0 4,312,390 + Rru_A3761 0.41 -0.6 4,312,390 + Rru_A3761 0.41 -0.2 4,312,391 - Rru_A3761 0.41 -0.2 4,312,391 - Rru_A3761 0.41 -1.3 4,312,391 - Rru_A3761 0.41 +0.3 4,312,391 - Rru_A3761 0.41 -0.5 4,312,391 - Rru_A3761 0.41 -0.5 4,312,391 - Rru_A3761 0.41 -0.6 4,312,609 + Rru_A3761 0.58 +0.3 4,312,610 - Rru_A3761 0.58 +0.6 4,312,651 + Rru_A3761 0.61 +0.0 4,312,651 + Rru_A3761 0.61 -0.4 4,312,651 + Rru_A3761 0.61 +0.6 4,312,652 - Rru_A3761 0.61 +0.3 4,312,652 - Rru_A3761 0.61 +0.3 4,312,652 - Rru_A3761 0.61 +0.0 4,312,652 - Rru_A3761 0.61 -0.3 4,312,652 - Rru_A3761 0.61 +0.3 4,312,652 - Rru_A3761 0.61 -0.5 4,312,652 - Rru_A3761 0.61 -1.7 4,312,782 + Rru_A3761 0.71 -0.6 4,312,782 + Rru_A3761 0.71 -0.0 4,312,783 - Rru_A3761 0.71 +1.0 4,312,793 - Rru_A3761 0.72 -1.7 4,312,793 - Rru_A3761 0.72 +0.7 4,312,799 + Rru_A3761 0.72 -1.4 4,312,799 + Rru_A3761 0.72 -0.6 4,312,799 + Rru_A3761 0.72 +0.2 4,312,799 + Rru_A3761 0.72 -0.3 4,312,799 + Rru_A3761 0.72 -0.4 4,312,799 + Rru_A3761 0.72 -0.4 4,312,800 - Rru_A3761 0.73 -2.0 4,312,800 - Rru_A3761 0.73 +0.4 4,312,800 - Rru_A3761 0.73 -1.4 4,313,341 + -0.4 4,313,395 + Rru_A3762 0.18 -0.2 4,313,568 + Rru_A3762 0.49 -0.2 4,313,568 + Rru_A3762 0.49 -1.8 4,313,568 + Rru_A3762 0.49 -4.0 4,313,597 + Rru_A3762 0.54 -0.9 4,313,749 + Rru_A3762 0.80 -1.3
Or see this region's nucleotide sequence