Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3702 and Rru_A3703 overlap by 4 nucleotides Rru_A3703 and Rru_A3704 are separated by 64 nucleotides Rru_A3704 and Rru_A3705 are separated by 60 nucleotides
Rru_A3702: Rru_A3702 - ABC transporter component (NCBI), at 4,250,676 to 4,251,452
_A3702
Rru_A3703: Rru_A3703 - ABC-3 transporter component (NCBI), at 4,251,449 to 4,252,321
_A3703
Rru_A3704: Rru_A3704 - Periplasmic solute binding protein (NCBI), at 4,252,386 to 4,253,336
_A3704
Rru_A3705: Rru_A3705 - Cell divisionFtsK/SpoIIIE (NCBI), at 4,253,397 to 4,255,946
_A3705
Position (kb)
4252
4253
4254 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4251.427 kb on + strand at 4251.730 kb on + strand, within Rru_A3703 at 4252.320 kb on - strand at 4252.496 kb on + strand, within Rru_A3704 at 4252.497 kb on - strand, within Rru_A3704 at 4252.497 kb on - strand, within Rru_A3704 at 4252.497 kb on - strand, within Rru_A3704 at 4252.497 kb on - strand, within Rru_A3704 at 4252.500 kb on - strand, within Rru_A3704 at 4252.500 kb on - strand, within Rru_A3704 at 4252.584 kb on + strand, within Rru_A3704 at 4252.854 kb on + strand, within Rru_A3704 at 4252.855 kb on - strand, within Rru_A3704 at 4252.911 kb on + strand, within Rru_A3704 at 4252.912 kb on - strand, within Rru_A3704 at 4252.912 kb on - strand, within Rru_A3704 at 4253.034 kb on + strand, within Rru_A3704 at 4253.049 kb on + strand, within Rru_A3704 at 4253.049 kb on + strand, within Rru_A3704 at 4253.050 kb on - strand, within Rru_A3704 at 4253.057 kb on + strand, within Rru_A3704 at 4253.057 kb on + strand, within Rru_A3704 at 4253.057 kb on + strand, within Rru_A3704 at 4253.058 kb on - strand, within Rru_A3704 at 4253.058 kb on - strand, within Rru_A3704 at 4253.280 kb on + strand at 4253.280 kb on + strand at 4253.280 kb on + strand at 4253.281 kb on - strand at 4253.334 kb on + strand at 4253.398 kb on + strand at 4253.399 kb on - strand at 4253.419 kb on + strand at 4253.527 kb on + strand at 4253.528 kb on - strand at 4253.528 kb on - strand at 4253.605 kb on + strand at 4253.692 kb on + strand, within Rru_A3705 at 4253.692 kb on + strand, within Rru_A3705
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 4,251,427 + -0.0 4,251,730 + Rru_A3703 0.32 +0.0 4,252,320 - -1.9 4,252,496 + Rru_A3704 0.12 -1.0 4,252,497 - Rru_A3704 0.12 -2.3 4,252,497 - Rru_A3704 0.12 -2.7 4,252,497 - Rru_A3704 0.12 -1.0 4,252,497 - Rru_A3704 0.12 +0.5 4,252,500 - Rru_A3704 0.12 -2.0 4,252,500 - Rru_A3704 0.12 +0.6 4,252,584 + Rru_A3704 0.21 -2.0 4,252,854 + Rru_A3704 0.49 +0.7 4,252,855 - Rru_A3704 0.49 -1.3 4,252,911 + Rru_A3704 0.55 +0.6 4,252,912 - Rru_A3704 0.55 -1.8 4,252,912 - Rru_A3704 0.55 -2.3 4,253,034 + Rru_A3704 0.68 -2.4 4,253,049 + Rru_A3704 0.70 -1.2 4,253,049 + Rru_A3704 0.70 -3.1 4,253,050 - Rru_A3704 0.70 -2.0 4,253,057 + Rru_A3704 0.71 -0.8 4,253,057 + Rru_A3704 0.71 -2.1 4,253,057 + Rru_A3704 0.71 -3.0 4,253,058 - Rru_A3704 0.71 -1.3 4,253,058 - Rru_A3704 0.71 -1.8 4,253,280 + -2.0 4,253,280 + -3.5 4,253,280 + -3.3 4,253,281 - -3.0 4,253,334 + +0.0 4,253,398 + -0.6 4,253,399 - -1.1 4,253,419 + +1.1 4,253,527 + -3.1 4,253,528 - +0.8 4,253,528 - -0.1 4,253,605 + +0.5 4,253,692 + Rru_A3705 0.12 +0.5 4,253,692 + Rru_A3705 0.12 +0.0
Or see this region's nucleotide sequence