Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3695 and Rru_A3696 are separated by 3 nucleotides Rru_A3696 and Rru_A3697 are separated by 74 nucleotides
Rru_A3695: Rru_A3695 - Acetoacetyl-CoA synthase (NCBI), at 4,240,734 to 4,242,740
_A3695
Rru_A3696: Rru_A3696 - Exodeoxyribonuclease III xth (NCBI), at 4,242,744 to 4,243,493
_A3696
Rru_A3697: Rru_A3697 - Fumarylacetoacetate (FAA) hydrolase (NCBI), at 4,243,568 to 4,244,269
_A3697
Position (kb)
4242
4243
4244 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4241.836 kb on - strand, within Rru_A3695 at 4241.836 kb on - strand, within Rru_A3695 at 4241.991 kb on + strand, within Rru_A3695 at 4241.991 kb on + strand, within Rru_A3695 at 4241.991 kb on + strand, within Rru_A3695 at 4242.050 kb on + strand, within Rru_A3695 at 4242.050 kb on + strand, within Rru_A3695 at 4242.051 kb on - strand, within Rru_A3695 at 4242.261 kb on + strand, within Rru_A3695 at 4242.599 kb on + strand at 4242.599 kb on + strand at 4242.599 kb on + strand at 4242.745 kb on + strand at 4242.745 kb on + strand at 4242.746 kb on - strand at 4242.767 kb on + strand at 4242.767 kb on + strand at 4243.032 kb on - strand, within Rru_A3696 at 4243.032 kb on - strand, within Rru_A3696 at 4243.032 kb on - strand, within Rru_A3696 at 4243.234 kb on + strand, within Rru_A3696 at 4243.235 kb on - strand, within Rru_A3696 at 4243.235 kb on - strand, within Rru_A3696 at 4243.356 kb on - strand, within Rru_A3696 at 4243.356 kb on - strand, within Rru_A3696 at 4243.753 kb on + strand, within Rru_A3697 at 4244.131 kb on + strand, within Rru_A3697 at 4244.131 kb on + strand, within Rru_A3697 at 4244.169 kb on + strand, within Rru_A3697 at 4244.169 kb on + strand, within Rru_A3697 at 4244.169 kb on + strand, within Rru_A3697 at 4244.170 kb on - strand, within Rru_A3697 at 4244.362 kb on - strand at 4244.363 kb on + strand at 4244.363 kb on + strand at 4244.363 kb on + strand at 4244.364 kb on - strand at 4244.399 kb on + strand at 4244.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 4,241,836 - Rru_A3695 0.55 -0.3 4,241,836 - Rru_A3695 0.55 -1.4 4,241,991 + Rru_A3695 0.63 -1.2 4,241,991 + Rru_A3695 0.63 -0.6 4,241,991 + Rru_A3695 0.63 +0.1 4,242,050 + Rru_A3695 0.66 +1.6 4,242,050 + Rru_A3695 0.66 -0.2 4,242,051 - Rru_A3695 0.66 -1.1 4,242,261 + Rru_A3695 0.76 -0.8 4,242,599 + +1.0 4,242,599 + +0.1 4,242,599 + -0.2 4,242,745 + -0.0 4,242,745 + +0.4 4,242,746 - +0.4 4,242,767 + -3.4 4,242,767 + +0.5 4,243,032 - Rru_A3696 0.38 -0.5 4,243,032 - Rru_A3696 0.38 -1.1 4,243,032 - Rru_A3696 0.38 -4.4 4,243,234 + Rru_A3696 0.65 +0.2 4,243,235 - Rru_A3696 0.65 -0.4 4,243,235 - Rru_A3696 0.65 -0.5 4,243,356 - Rru_A3696 0.82 -3.1 4,243,356 - Rru_A3696 0.82 +0.3 4,243,753 + Rru_A3697 0.26 -1.7 4,244,131 + Rru_A3697 0.80 +0.4 4,244,131 + Rru_A3697 0.80 +0.5 4,244,169 + Rru_A3697 0.86 -0.6 4,244,169 + Rru_A3697 0.86 -0.3 4,244,169 + Rru_A3697 0.86 +1.3 4,244,170 - Rru_A3697 0.86 -0.4 4,244,362 - +0.1 4,244,363 + +1.6 4,244,363 + +0.1 4,244,363 + +1.1 4,244,364 - -0.5 4,244,399 + +0.3 4,244,481 - -0.6
Or see this region's nucleotide sequence