Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3655

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3653 and Rru_A3654 are separated by 141 nucleotidesRru_A3654 and Rru_A3655 are separated by 145 nucleotidesRru_A3655 and Rru_A3656 are separated by 59 nucleotides Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797 _A3653 Rru_A3654: Rru_A3654 - Protein of unknown function DUF74 (NCBI), at 4,193,939 to 4,194,274 _A3654 Rru_A3655: Rru_A3655 - Phosphoribosylaminoimidazolecarboxamideformyltransferase (NCBI), at 4,194,420 to 4,196,000 _A3655 Rru_A3656: Rru_A3656 - Polysaccharide biosynthesis protein CapD (NCBI), at 4,196,060 to 4,198,018 _A3656 Position (kb) 4194 4195 4196 4197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4193.564 kb on + strandat 4193.564 kb on + strandat 4193.564 kb on + strandat 4193.565 kb on - strandat 4193.565 kb on - strandat 4193.576 kb on + strandat 4193.576 kb on + strandat 4193.577 kb on - strandat 4193.795 kb on + strandat 4193.951 kb on + strandat 4194.012 kb on + strand, within Rru_A3654at 4194.013 kb on - strand, within Rru_A3654at 4194.053 kb on - strand, within Rru_A3654at 4194.114 kb on + strand, within Rru_A3654at 4194.114 kb on + strand, within Rru_A3654at 4194.114 kb on + strand, within Rru_A3654at 4194.115 kb on - strand, within Rru_A3654at 4194.371 kb on - strandat 4194.371 kb on - strandat 4194.371 kb on - strandat 4194.376 kb on + strandat 4194.382 kb on - strandat 4194.382 kb on - strandat 4194.400 kb on + strandat 4194.400 kb on + strandat 4194.422 kb on - strandat 4196.061 kb on + strandat 4196.061 kb on + strandat 4196.062 kb on - strandat 4196.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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4,193,564 + -0.8
4,193,564 + -1.4
4,193,564 + -0.3
4,193,565 - +2.2
4,193,565 - +0.2
4,193,576 + -2.6
4,193,576 + +0.3
4,193,577 - -3.9
4,193,795 + -1.0
4,193,951 + +0.4
4,194,012 + Rru_A3654 0.22 +0.5
4,194,013 - Rru_A3654 0.22 -1.1
4,194,053 - Rru_A3654 0.34 -1.5
4,194,114 + Rru_A3654 0.52 -0.7
4,194,114 + Rru_A3654 0.52 -0.0
4,194,114 + Rru_A3654 0.52 +1.6
4,194,115 - Rru_A3654 0.52 -1.1
4,194,371 - -0.9
4,194,371 - -0.0
4,194,371 - -0.6
4,194,376 + +0.1
4,194,382 - -1.2
4,194,382 - -4.4
4,194,400 + -1.9
4,194,400 + -0.0
4,194,422 - -1.0
4,196,061 + -0.2
4,196,061 + -0.1
4,196,062 - -0.1
4,196,062 - +1.5

Or see this region's nucleotide sequence