Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3269

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3267 and Rru_A3268 overlap by 4 nucleotidesRru_A3268 and Rru_A3269 overlap by 23 nucleotidesRru_A3269 and Rru_A3270 are separated by 147 nucleotidesRru_A3270 and Rru_A3271 are separated by 2 nucleotides Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045 _A3267 Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668 _A3268 Rru_A3269: Rru_A3269 - hypothetical protein (NCBI), at 3,767,646 to 3,768,440 _A3269 Rru_A3270: Rru_A3270 - Hydroxyacylglutathione hydrolase (NCBI), at 3,768,588 to 3,769,358 _A3270 Rru_A3271: Rru_A3271 - glutathione S-transferase family protein (NCBI), at 3,769,361 to 3,769,999 _A3271 Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.833 kb on + strand, within Rru_A3267at 3766.842 kb on + strand, within Rru_A3267at 3766.843 kb on - strand, within Rru_A3267at 3767.366 kb on + strand, within Rru_A3268at 3767.406 kb on - strand, within Rru_A3268at 3767.737 kb on + strand, within Rru_A3269at 3767.737 kb on + strand, within Rru_A3269at 3767.737 kb on + strand, within Rru_A3269at 3767.738 kb on - strand, within Rru_A3269at 3767.763 kb on - strand, within Rru_A3269at 3768.371 kb on + strandat 3768.395 kb on - strandat 3768.404 kb on + strandat 3768.440 kb on + strandat 3768.440 kb on + strandat 3768.440 kb on + strandat 3768.440 kb on + strandat 3768.441 kb on - strandat 3768.441 kb on - strandat 3768.441 kb on - strandat 3768.441 kb on - strandat 3768.441 kb on - strandat 3768.441 kb on - strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.633 kb on + strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.634 kb on - strandat 3768.639 kb on + strandat 3768.639 kb on + strandat 3768.639 kb on + strandat 3768.639 kb on + strandat 3768.640 kb on - strandat 3768.640 kb on - strandat 3768.743 kb on + strand, within Rru_A3270at 3768.744 kb on - strand, within Rru_A3270at 3768.765 kb on + strand, within Rru_A3270at 3768.766 kb on - strand, within Rru_A3270at 3768.766 kb on - strand, within Rru_A3270at 3769.107 kb on + strand, within Rru_A3270at 3769.107 kb on + strand, within Rru_A3270at 3769.107 kb on + strand, within Rru_A3270at 3769.107 kb on + strand, within Rru_A3270at 3769.108 kb on - strand, within Rru_A3270at 3769.108 kb on - strand, within Rru_A3270at 3769.109 kb on + strand, within Rru_A3270at 3769.110 kb on - strand, within Rru_A3270at 3769.110 kb on - strand, within Rru_A3270at 3769.110 kb on - strand, within Rru_A3270

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,766,671 + Rru_A3267 0.41 -0.8
3,766,671 + Rru_A3267 0.41 -2.3
3,766,671 + Rru_A3267 0.41 -2.8
3,766,671 + Rru_A3267 0.41 -2.5
3,766,833 + Rru_A3267 0.67 +2.7
3,766,842 + Rru_A3267 0.68 +0.5
3,766,843 - Rru_A3267 0.68 -3.7
3,767,366 + Rru_A3268 0.52 -0.4
3,767,406 - Rru_A3268 0.58 -0.1
3,767,737 + Rru_A3269 0.11 -1.2
3,767,737 + Rru_A3269 0.11 +0.8
3,767,737 + Rru_A3269 0.11 +0.5
3,767,738 - Rru_A3269 0.12 +1.4
3,767,763 - Rru_A3269 0.15 +0.2
3,768,371 + +0.6
3,768,395 - +0.7
3,768,404 + +0.1
3,768,440 + +0.1
3,768,440 + -0.5
3,768,440 + +1.0
3,768,440 + +1.6
3,768,441 - -0.1
3,768,441 - -1.2
3,768,441 - -2.5
3,768,441 - -1.1
3,768,441 - +0.9
3,768,441 - +0.7
3,768,633 + -2.5
3,768,633 + -0.6
3,768,633 + -1.3
3,768,633 + -0.7
3,768,633 + +1.0
3,768,633 + +0.6
3,768,633 + -1.6
3,768,633 + +1.8
3,768,633 + -4.8
3,768,634 - +0.0
3,768,634 - -0.7
3,768,634 - +0.1
3,768,634 - -2.1
3,768,634 - +1.4
3,768,634 - -0.4
3,768,634 - -0.3
3,768,634 - -1.9
3,768,634 - -0.9
3,768,634 - -0.1
3,768,634 - -1.0
3,768,634 - -1.6
3,768,634 - +0.6
3,768,634 - +1.7
3,768,634 - -2.1
3,768,634 - +1.7
3,768,639 + -2.6
3,768,639 + -0.9
3,768,639 + -0.1
3,768,639 + -1.2
3,768,640 - -0.7
3,768,640 - -0.2
3,768,743 + Rru_A3270 0.20 +0.7
3,768,744 - Rru_A3270 0.20 -0.2
3,768,765 + Rru_A3270 0.23 +1.5
3,768,766 - Rru_A3270 0.23 +1.0
3,768,766 - Rru_A3270 0.23 -0.1
3,769,107 + Rru_A3270 0.67 -0.7
3,769,107 + Rru_A3270 0.67 -0.3
3,769,107 + Rru_A3270 0.67 -0.5
3,769,107 + Rru_A3270 0.67 -1.3
3,769,108 - Rru_A3270 0.67 +0.7
3,769,108 - Rru_A3270 0.67 -1.7
3,769,109 + Rru_A3270 0.68 +0.3
3,769,110 - Rru_A3270 0.68 +0.3
3,769,110 - Rru_A3270 0.68 +0.0
3,769,110 - Rru_A3270 0.68 -1.5

Or see this region's nucleotide sequence