Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3266

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3265 and Rru_A3266 are separated by 188 nucleotidesRru_A3266 and Rru_A3267 overlap by 4 nucleotidesRru_A3267 and Rru_A3268 overlap by 4 nucleotides Rru_A3265: Rru_A3265 - Chorismate mutase (NCBI), at 3,764,189 to 3,765,049 _A3265 Rru_A3266: Rru_A3266 - Homoserine O-acetyltransferase (NCBI), at 3,765,238 to 3,766,413 _A3266 Rru_A3267: Rru_A3267 - Methionine biosynthesis MetW (NCBI), at 3,766,410 to 3,767,045 _A3267 Rru_A3268: Rru_A3268 - hypothetical protein (NCBI), at 3,767,042 to 3,767,668 _A3268 Position (kb) 3765 3766 3767Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3765.164 kb on + strandat 3765.164 kb on + strandat 3765.164 kb on + strandat 3765.164 kb on + strandat 3765.349 kb on + strandat 3765.349 kb on + strandat 3765.349 kb on + strandat 3765.398 kb on + strand, within Rru_A3266at 3765.398 kb on + strand, within Rru_A3266at 3765.399 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.512 kb on - strand, within Rru_A3266at 3765.739 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.924 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.931 kb on + strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.932 kb on - strand, within Rru_A3266at 3765.997 kb on + strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3765.998 kb on - strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.081 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.087 kb on + strand, within Rru_A3266at 3766.088 kb on - strand, within Rru_A3266at 3766.443 kb on + strandat 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.527 kb on + strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.528 kb on - strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.671 kb on + strand, within Rru_A3267at 3766.833 kb on + strand, within Rru_A3267at 3766.842 kb on + strand, within Rru_A3267at 3766.843 kb on - strand, within Rru_A3267at 3767.366 kb on + strand, within Rru_A3268at 3767.406 kb on - strand, within Rru_A3268

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,765,164 + -1.5
3,765,164 + -0.1
3,765,164 + +0.1
3,765,164 + -3.0
3,765,349 + -2.4
3,765,349 + +1.7
3,765,349 + -1.9
3,765,398 + Rru_A3266 0.14 -1.7
3,765,398 + Rru_A3266 0.14 -2.6
3,765,399 - Rru_A3266 0.14 -2.7
3,765,512 - Rru_A3266 0.23 -2.9
3,765,512 - Rru_A3266 0.23 -2.0
3,765,512 - Rru_A3266 0.23 -0.7
3,765,512 - Rru_A3266 0.23 +1.7
3,765,739 + Rru_A3266 0.43 -0.3
3,765,924 + Rru_A3266 0.58 -0.1
3,765,924 + Rru_A3266 0.58 -1.8
3,765,924 + Rru_A3266 0.58 -1.8
3,765,931 + Rru_A3266 0.59 -0.2
3,765,931 + Rru_A3266 0.59 -2.5
3,765,931 + Rru_A3266 0.59 -2.6
3,765,931 + Rru_A3266 0.59 -1.3
3,765,931 + Rru_A3266 0.59 -2.4
3,765,932 - Rru_A3266 0.59 -3.9
3,765,932 - Rru_A3266 0.59 -1.1
3,765,932 - Rru_A3266 0.59 -1.5
3,765,932 - Rru_A3266 0.59 -2.0
3,765,932 - Rru_A3266 0.59 -1.3
3,765,997 + Rru_A3266 0.65 -3.9
3,765,998 - Rru_A3266 0.65 -0.6
3,765,998 - Rru_A3266 0.65 -2.5
3,765,998 - Rru_A3266 0.65 -2.2
3,765,998 - Rru_A3266 0.65 -1.1
3,766,081 + Rru_A3266 0.72 -2.6
3,766,081 + Rru_A3266 0.72 -3.3
3,766,081 + Rru_A3266 0.72 -3.9
3,766,081 + Rru_A3266 0.72 -2.0
3,766,081 + Rru_A3266 0.72 -1.1
3,766,087 + Rru_A3266 0.72 -4.5
3,766,087 + Rru_A3266 0.72 -1.0
3,766,087 + Rru_A3266 0.72 -3.2
3,766,088 - Rru_A3266 0.72 -2.1
3,766,443 + -1.4
3,766,527 + Rru_A3267 0.18 -1.4
3,766,527 + Rru_A3267 0.18 -1.1
3,766,527 + Rru_A3267 0.18 -0.0
3,766,527 + Rru_A3267 0.18 -2.5
3,766,528 - Rru_A3267 0.19 -1.8
3,766,528 - Rru_A3267 0.19 -3.9
3,766,528 - Rru_A3267 0.19 -2.8
3,766,671 + Rru_A3267 0.41 -0.8
3,766,671 + Rru_A3267 0.41 -2.3
3,766,671 + Rru_A3267 0.41 -2.8
3,766,671 + Rru_A3267 0.41 -2.5
3,766,833 + Rru_A3267 0.67 +2.7
3,766,842 + Rru_A3267 0.68 +0.5
3,766,843 - Rru_A3267 0.68 -3.7
3,767,366 + Rru_A3268 0.52 -0.4
3,767,406 - Rru_A3268 0.58 -0.1

Or see this region's nucleotide sequence