Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3188 and Rru_A3189 are separated by 106 nucleotides Rru_A3189 and Rru_A3190 are separated by 100 nucleotides
Rru_A3188: Rru_A3188 - Histidine Kinase (NCBI), at 3,677,198 to 3,678,568
_A3188
Rru_A3189: Rru_A3189 - hypothetical protein (NCBI), at 3,678,675 to 3,679,205
_A3189
Rru_A3190: Rru_A3190 - Aspartate carbamoyltransferase (NCBI), at 3,679,306 to 3,680,265
_A3190
Position (kb)
3678
3679
3680 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3678.413 kb on - strand, within Rru_A3188 at 3678.413 kb on - strand, within Rru_A3188 at 3678.728 kb on + strand, within Rru_A3189 at 3678.761 kb on + strand, within Rru_A3189 at 3678.903 kb on + strand, within Rru_A3189 at 3678.903 kb on + strand, within Rru_A3189 at 3678.903 kb on + strand, within Rru_A3189 at 3678.903 kb on + strand, within Rru_A3189 at 3678.904 kb on - strand, within Rru_A3189 at 3678.960 kb on + strand, within Rru_A3189 at 3678.960 kb on + strand, within Rru_A3189 at 3678.960 kb on + strand, within Rru_A3189 at 3678.960 kb on + strand, within Rru_A3189 at 3678.960 kb on + strand, within Rru_A3189 at 3678.961 kb on - strand, within Rru_A3189 at 3679.143 kb on + strand, within Rru_A3189 at 3679.144 kb on - strand, within Rru_A3189 at 3679.144 kb on - strand, within Rru_A3189 at 3679.145 kb on + strand, within Rru_A3189 at 3679.145 kb on + strand, within Rru_A3189 at 3679.145 kb on + strand, within Rru_A3189 at 3679.146 kb on - strand, within Rru_A3189 at 3679.146 kb on - strand, within Rru_A3189 at 3679.291 kb on - strand at 3679.292 kb on + strand at 3679.293 kb on - strand at 3679.293 kb on - strand at 3679.293 kb on - strand at 3679.293 kb on - strand at 3679.331 kb on - strand at 3679.409 kb on - strand, within Rru_A3190 at 3679.975 kb on - strand, within Rru_A3190 at 3680.041 kb on + strand, within Rru_A3190 at 3680.051 kb on - strand, within Rru_A3190 at 3680.051 kb on - strand, within Rru_A3190
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,678,413 - Rru_A3188 0.89 -0.3 3,678,413 - Rru_A3188 0.89 -0.8 3,678,728 + Rru_A3189 0.10 +1.1 3,678,761 + Rru_A3189 0.16 -0.7 3,678,903 + Rru_A3189 0.43 -0.4 3,678,903 + Rru_A3189 0.43 -0.4 3,678,903 + Rru_A3189 0.43 -2.7 3,678,903 + Rru_A3189 0.43 +0.2 3,678,904 - Rru_A3189 0.43 +1.2 3,678,960 + Rru_A3189 0.54 +0.4 3,678,960 + Rru_A3189 0.54 +0.3 3,678,960 + Rru_A3189 0.54 -0.3 3,678,960 + Rru_A3189 0.54 +1.2 3,678,960 + Rru_A3189 0.54 +0.0 3,678,961 - Rru_A3189 0.54 -0.2 3,679,143 + Rru_A3189 0.88 +1.1 3,679,144 - Rru_A3189 0.88 -0.3 3,679,144 - Rru_A3189 0.88 -1.9 3,679,145 + Rru_A3189 0.89 -1.2 3,679,145 + Rru_A3189 0.89 -0.7 3,679,145 + Rru_A3189 0.89 +0.1 3,679,146 - Rru_A3189 0.89 -0.4 3,679,146 - Rru_A3189 0.89 +0.6 3,679,291 - -2.1 3,679,292 + +0.6 3,679,293 - -0.9 3,679,293 - -1.4 3,679,293 - +0.5 3,679,293 - -1.3 3,679,331 - -3.2 3,679,409 - Rru_A3190 0.11 -3.1 3,679,975 - Rru_A3190 0.70 -1.4 3,680,041 + Rru_A3190 0.77 -2.8 3,680,051 - Rru_A3190 0.78 -1.0 3,680,051 - Rru_A3190 0.78 -3.1
Or see this region's nucleotide sequence