Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3162

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3160 and Rru_A3161 are separated by 25 nucleotidesRru_A3161 and Rru_A3162 overlap by 4 nucleotidesRru_A3162 and Rru_A3163 are separated by 50 nucleotides Rru_A3160: Rru_A3160 - Protein of unknown function DUF6, transmembrane (NCBI), at 3,651,997 to 3,652,905 _A3160 Rru_A3161: Rru_A3161 - hypothetical protein (NCBI), at 3,652,931 to 3,653,791 _A3161 Rru_A3162: Rru_A3162 - Prephenate dehydratase (NCBI), at 3,653,788 to 3,654,654 _A3162 Rru_A3163: Rru_A3163 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI), at 3,654,705 to 3,655,505 _A3163 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3652.903 kb on + strandat 3653.063 kb on - strand, within Rru_A3161at 3653.091 kb on + strand, within Rru_A3161at 3653.091 kb on + strand, within Rru_A3161at 3653.092 kb on - strand, within Rru_A3161at 3653.092 kb on - strand, within Rru_A3161at 3653.092 kb on - strand, within Rru_A3161at 3653.092 kb on - strand, within Rru_A3161at 3653.092 kb on - strand, within Rru_A3161at 3653.107 kb on + strand, within Rru_A3161at 3653.108 kb on - strand, within Rru_A3161at 3653.154 kb on + strand, within Rru_A3161at 3653.193 kb on + strand, within Rru_A3161at 3653.193 kb on + strand, within Rru_A3161at 3653.193 kb on + strand, within Rru_A3161at 3653.193 kb on + strand, within Rru_A3161at 3653.193 kb on + strand, within Rru_A3161at 3653.194 kb on - strand, within Rru_A3161at 3653.194 kb on - strand, within Rru_A3161at 3653.194 kb on - strand, within Rru_A3161at 3653.194 kb on - strand, within Rru_A3161at 3653.825 kb on + strandat 3653.936 kb on + strand, within Rru_A3162at 3653.936 kb on + strand, within Rru_A3162at 3653.937 kb on - strand, within Rru_A3162at 3653.937 kb on - strand, within Rru_A3162at 3653.972 kb on + strand, within Rru_A3162at 3653.973 kb on - strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.991 kb on + strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3653.992 kb on - strand, within Rru_A3162at 3654.029 kb on + strand, within Rru_A3162at 3654.029 kb on + strand, within Rru_A3162at 3654.029 kb on + strand, within Rru_A3162at 3654.029 kb on + strand, within Rru_A3162at 3654.029 kb on + strand, within Rru_A3162at 3654.030 kb on - strand, within Rru_A3162at 3654.030 kb on - strand, within Rru_A3162at 3654.030 kb on - strand, within Rru_A3162at 3654.030 kb on - strand, within Rru_A3162at 3654.175 kb on + strand, within Rru_A3162at 3654.182 kb on + strand, within Rru_A3162at 3654.182 kb on + strand, within Rru_A3162at 3654.182 kb on + strand, within Rru_A3162at 3654.182 kb on + strand, within Rru_A3162at 3654.410 kb on + strand, within Rru_A3162at 3654.423 kb on + strand, within Rru_A3162at 3654.423 kb on + strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.504 kb on - strand, within Rru_A3162at 3654.514 kb on - strand, within Rru_A3162at 3654.514 kb on - strand, within Rru_A3162at 3654.580 kb on + strandat 3654.581 kb on - strandat 3655.554 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
3,652,903 + -3.4
3,653,063 - Rru_A3161 0.15 +0.3
3,653,091 + Rru_A3161 0.19 -1.3
3,653,091 + Rru_A3161 0.19 +0.6
3,653,092 - Rru_A3161 0.19 +0.3
3,653,092 - Rru_A3161 0.19 -0.9
3,653,092 - Rru_A3161 0.19 -2.6
3,653,092 - Rru_A3161 0.19 -1.1
3,653,092 - Rru_A3161 0.19 +0.7
3,653,107 + Rru_A3161 0.20 +0.4
3,653,108 - Rru_A3161 0.21 +1.2
3,653,154 + Rru_A3161 0.26 -1.9
3,653,193 + Rru_A3161 0.30 -0.9
3,653,193 + Rru_A3161 0.30 -1.3
3,653,193 + Rru_A3161 0.30 +0.1
3,653,193 + Rru_A3161 0.30 +0.6
3,653,193 + Rru_A3161 0.30 +0.5
3,653,194 - Rru_A3161 0.31 -0.7
3,653,194 - Rru_A3161 0.31 -0.4
3,653,194 - Rru_A3161 0.31 +0.2
3,653,194 - Rru_A3161 0.31 -3.4
3,653,825 + -1.9
3,653,936 + Rru_A3162 0.17 -2.4
3,653,936 + Rru_A3162 0.17 -3.7
3,653,937 - Rru_A3162 0.17 -3.1
3,653,937 - Rru_A3162 0.17 -0.4
3,653,972 + Rru_A3162 0.21 -0.9
3,653,973 - Rru_A3162 0.21 -2.3
3,653,991 + Rru_A3162 0.23 -2.0
3,653,991 + Rru_A3162 0.23 -2.4
3,653,991 + Rru_A3162 0.23 -2.4
3,653,991 + Rru_A3162 0.23 -3.7
3,653,991 + Rru_A3162 0.23 -3.5
3,653,991 + Rru_A3162 0.23 -2.9
3,653,991 + Rru_A3162 0.23 -3.6
3,653,992 - Rru_A3162 0.24 -1.4
3,653,992 - Rru_A3162 0.24 -3.1
3,653,992 - Rru_A3162 0.24 -4.3
3,653,992 - Rru_A3162 0.24 -3.8
3,653,992 - Rru_A3162 0.24 -1.5
3,653,992 - Rru_A3162 0.24 -1.6
3,653,992 - Rru_A3162 0.24 -2.7
3,654,029 + Rru_A3162 0.28 -2.6
3,654,029 + Rru_A3162 0.28 -3.9
3,654,029 + Rru_A3162 0.28 -1.5
3,654,029 + Rru_A3162 0.28 -2.3
3,654,029 + Rru_A3162 0.28 -3.0
3,654,030 - Rru_A3162 0.28 -3.7
3,654,030 - Rru_A3162 0.28 -2.9
3,654,030 - Rru_A3162 0.28 -4.0
3,654,030 - Rru_A3162 0.28 -3.1
3,654,175 + Rru_A3162 0.45 -3.2
3,654,182 + Rru_A3162 0.45 -2.1
3,654,182 + Rru_A3162 0.45 -1.6
3,654,182 + Rru_A3162 0.45 -0.5
3,654,182 + Rru_A3162 0.45 -3.8
3,654,410 + Rru_A3162 0.72 -4.6
3,654,423 + Rru_A3162 0.73 -1.4
3,654,423 + Rru_A3162 0.73 -2.1
3,654,504 - Rru_A3162 0.83 -3.2
3,654,504 - Rru_A3162 0.83 -2.4
3,654,504 - Rru_A3162 0.83 -2.1
3,654,504 - Rru_A3162 0.83 -0.2
3,654,504 - Rru_A3162 0.83 -2.9
3,654,504 - Rru_A3162 0.83 -2.9
3,654,504 - Rru_A3162 0.83 -3.7
3,654,514 - Rru_A3162 0.84 -2.1
3,654,514 - Rru_A3162 0.84 -3.2
3,654,580 + -1.8
3,654,581 - -2.3
3,655,554 + +0.3

Or see this region's nucleotide sequence