Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2982 and Rru_A2983 are separated by 181 nucleotides Rru_A2983 and Rru_A2984 are separated by 202 nucleotides
Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686
_A2982
Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737
_A2983
Rru_A2984: Rru_A2984 - CrtD protein (NCBI), at 3,435,940 to 3,437,451
_A2984
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.193 kb on + strand, within Rru_A2982 at 3434.268 kb on + strand, within Rru_A2982 at 3434.521 kb on - strand, within Rru_A2982 at 3434.604 kb on + strand at 3434.604 kb on + strand at 3434.605 kb on - strand at 3434.925 kb on - strand at 3435.128 kb on - strand, within Rru_A2983 at 3435.436 kb on + strand, within Rru_A2983 at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.719 kb on + strand at 3435.816 kb on + strand at 3435.817 kb on - strand at 3435.825 kb on - strand at 3435.932 kb on - strand at 3436.519 kb on + strand, within Rru_A2984 at 3436.520 kb on - strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.528 kb on + strand, within Rru_A2984 at 3436.529 kb on - strand, within Rru_A2984 at 3436.529 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984 at 3436.732 kb on - strand, within Rru_A2984
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,434,193 + Rru_A2982 0.59 +0.1 3,434,193 + Rru_A2982 0.59 +1.2 3,434,193 + Rru_A2982 0.59 +0.1 3,434,193 + Rru_A2982 0.59 -2.0 3,434,268 + Rru_A2982 0.65 +0.2 3,434,521 - Rru_A2982 0.86 +0.9 3,434,604 + +0.1 3,434,604 + +0.1 3,434,605 - +0.7 3,434,925 - +2.6 3,435,128 - Rru_A2983 0.30 -2.4 3,435,436 + Rru_A2983 0.65 -3.0 3,435,719 + -2.8 3,435,719 + -1.9 3,435,719 + -2.2 3,435,719 + -2.5 3,435,816 + -0.8 3,435,817 - +0.3 3,435,825 - -0.7 3,435,932 - -0.8 3,436,519 + Rru_A2984 0.38 -1.7 3,436,520 - Rru_A2984 0.38 -1.3 3,436,528 + Rru_A2984 0.39 +0.5 3,436,528 + Rru_A2984 0.39 +0.4 3,436,528 + Rru_A2984 0.39 -1.7 3,436,528 + Rru_A2984 0.39 -0.4 3,436,528 + Rru_A2984 0.39 -1.9 3,436,528 + Rru_A2984 0.39 -0.3 3,436,529 - Rru_A2984 0.39 -0.8 3,436,529 - Rru_A2984 0.39 -0.4 3,436,732 - Rru_A2984 0.52 -1.1 3,436,732 - Rru_A2984 0.52 -0.5 3,436,732 - Rru_A2984 0.52 -1.3 3,436,732 - Rru_A2984 0.52 -3.3 3,436,732 - Rru_A2984 0.52 -1.8
Or see this region's nucleotide sequence