Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2893

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2891 and Rru_A2892 are separated by 27 nucleotidesRru_A2892 and Rru_A2893 overlap by 4 nucleotidesRru_A2893 and Rru_A2894 overlap by 4 nucleotidesRru_A2894 and Rru_A2895 are separated by 47 nucleotides Rru_A2891: Rru_A2891 - hypothetical protein (NCBI), at 3,334,553 to 3,335,254 _A2891 Rru_A2892: Rru_A2892 - ABC-3 transporter component (NCBI), at 3,335,282 to 3,336,139 _A2892 Rru_A2893: Rru_A2893 - ABC-3 transporter component (NCBI), at 3,336,136 to 3,336,996 _A2893 Rru_A2894: Rru_A2894 - ABC transporter component (NCBI), at 3,336,993 to 3,337,895 _A2894 Rru_A2895: Rru_A2895 - Twin-arginine translocation pathway signal (NCBI), at 3,337,943 to 3,338,875 _A2895 Position (kb) 3336 3337Strain fitness (log2 ratio) -2 -1 0 1 2at 3335.399 kb on + strand, within Rru_A2892at 3335.413 kb on + strand, within Rru_A2892at 3335.413 kb on + strand, within Rru_A2892at 3335.413 kb on + strand, within Rru_A2892at 3335.413 kb on + strand, within Rru_A2892at 3335.415 kb on + strand, within Rru_A2892at 3335.415 kb on + strand, within Rru_A2892at 3335.416 kb on - strand, within Rru_A2892at 3335.416 kb on - strand, within Rru_A2892at 3335.416 kb on - strand, within Rru_A2892at 3335.416 kb on - strand, within Rru_A2892at 3335.798 kb on - strand, within Rru_A2892at 3335.872 kb on + strand, within Rru_A2892at 3335.883 kb on + strand, within Rru_A2892at 3335.884 kb on - strand, within Rru_A2892at 3335.952 kb on + strand, within Rru_A2892at 3335.952 kb on + strand, within Rru_A2892at 3335.952 kb on + strand, within Rru_A2892at 3335.953 kb on - strand, within Rru_A2892at 3335.953 kb on - strand, within Rru_A2892at 3336.284 kb on + strand, within Rru_A2893at 3336.618 kb on + strand, within Rru_A2893at 3336.618 kb on + strand, within Rru_A2893at 3336.619 kb on - strand, within Rru_A2893at 3336.619 kb on - strand, within Rru_A2893at 3336.619 kb on - strand, within Rru_A2893at 3336.959 kb on + strandat 3336.959 kb on + strandat 3336.959 kb on + strandat 3336.959 kb on + strandat 3336.959 kb on + strandat 3336.959 kb on + strandat 3336.960 kb on - strandat 3336.960 kb on - strandat 3336.960 kb on - strandat 3336.960 kb on - strandat 3337.049 kb on - strandat 3337.627 kb on + strand, within Rru_A2894at 3337.627 kb on + strand, within Rru_A2894at 3337.627 kb on + strand, within Rru_A2894at 3337.627 kb on + strand, within Rru_A2894at 3337.627 kb on + strand, within Rru_A2894at 3337.628 kb on - strand, within Rru_A2894at 3337.628 kb on - strand, within Rru_A2894at 3337.811 kb on + strandat 3337.825 kb on + strandat 3337.825 kb on + strandat 3337.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,335,399 + Rru_A2892 0.14 -1.2
3,335,413 + Rru_A2892 0.15 +0.1
3,335,413 + Rru_A2892 0.15 -0.9
3,335,413 + Rru_A2892 0.15 +1.4
3,335,413 + Rru_A2892 0.15 +0.6
3,335,415 + Rru_A2892 0.16 -0.8
3,335,415 + Rru_A2892 0.16 +0.4
3,335,416 - Rru_A2892 0.16 -0.3
3,335,416 - Rru_A2892 0.16 -0.1
3,335,416 - Rru_A2892 0.16 -0.4
3,335,416 - Rru_A2892 0.16 +0.7
3,335,798 - Rru_A2892 0.60 +0.4
3,335,872 + Rru_A2892 0.69 +1.1
3,335,883 + Rru_A2892 0.70 +0.8
3,335,884 - Rru_A2892 0.70 -0.6
3,335,952 + Rru_A2892 0.78 +0.6
3,335,952 + Rru_A2892 0.78 -1.4
3,335,952 + Rru_A2892 0.78 +1.2
3,335,953 - Rru_A2892 0.78 +0.6
3,335,953 - Rru_A2892 0.78 +1.6
3,336,284 + Rru_A2893 0.17 +1.4
3,336,618 + Rru_A2893 0.56 -1.1
3,336,618 + Rru_A2893 0.56 -1.2
3,336,619 - Rru_A2893 0.56 +1.3
3,336,619 - Rru_A2893 0.56 -0.6
3,336,619 - Rru_A2893 0.56 -1.7
3,336,959 + +0.6
3,336,959 + -1.7
3,336,959 + -0.3
3,336,959 + -1.8
3,336,959 + +0.5
3,336,959 + -0.5
3,336,960 - -0.3
3,336,960 - +0.7
3,336,960 - +0.5
3,336,960 - -1.7
3,337,049 - -1.2
3,337,627 + Rru_A2894 0.70 -1.9
3,337,627 + Rru_A2894 0.70 -1.7
3,337,627 + Rru_A2894 0.70 -0.3
3,337,627 + Rru_A2894 0.70 -1.1
3,337,627 + Rru_A2894 0.70 +0.2
3,337,628 - Rru_A2894 0.70 +0.4
3,337,628 - Rru_A2894 0.70 +1.4
3,337,811 + +0.2
3,337,825 + +2.2
3,337,825 + +0.0
3,337,826 - +0.1

Or see this region's nucleotide sequence