Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2890 and Rru_A2891 overlap by 4 nucleotides Rru_A2891 and Rru_A2892 are separated by 27 nucleotides Rru_A2892 and Rru_A2893 overlap by 4 nucleotides Rru_A2893 and Rru_A2894 overlap by 4 nucleotides
Rru_A2890: Rru_A2890 - hypothetical protein (NCBI), at 3,334,110 to 3,334,556
_A2890
Rru_A2891: Rru_A2891 - hypothetical protein (NCBI), at 3,334,553 to 3,335,254
_A2891
Rru_A2892: Rru_A2892 - ABC-3 transporter component (NCBI), at 3,335,282 to 3,336,139
_A2892
Rru_A2893: Rru_A2893 - ABC-3 transporter component (NCBI), at 3,336,136 to 3,336,996
_A2893
Rru_A2894: Rru_A2894 - ABC transporter component (NCBI), at 3,336,993 to 3,337,895
_A2894
Position (kb)
3335
3336
3337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3334.383 kb on + strand, within Rru_A2890 at 3334.383 kb on + strand, within Rru_A2890 at 3334.384 kb on - strand, within Rru_A2890 at 3334.384 kb on - strand, within Rru_A2890 at 3334.384 kb on - strand, within Rru_A2890 at 3334.780 kb on + strand, within Rru_A2891 at 3334.780 kb on + strand, within Rru_A2891 at 3334.780 kb on + strand, within Rru_A2891 at 3334.781 kb on - strand, within Rru_A2891 at 3334.781 kb on - strand, within Rru_A2891 at 3334.781 kb on - strand, within Rru_A2891 at 3334.801 kb on + strand, within Rru_A2891 at 3334.856 kb on + strand, within Rru_A2891 at 3334.856 kb on + strand, within Rru_A2891 at 3334.856 kb on + strand, within Rru_A2891 at 3334.857 kb on - strand, within Rru_A2891 at 3334.857 kb on - strand, within Rru_A2891 at 3334.857 kb on - strand, within Rru_A2891 at 3334.867 kb on + strand, within Rru_A2891 at 3334.867 kb on + strand, within Rru_A2891 at 3334.867 kb on + strand, within Rru_A2891 at 3334.868 kb on - strand, within Rru_A2891 at 3334.868 kb on - strand, within Rru_A2891 at 3334.898 kb on + strand, within Rru_A2891 at 3334.898 kb on + strand, within Rru_A2891 at 3334.899 kb on - strand, within Rru_A2891 at 3334.899 kb on - strand, within Rru_A2891 at 3334.952 kb on + strand, within Rru_A2891 at 3335.051 kb on + strand, within Rru_A2891 at 3335.051 kb on + strand, within Rru_A2891 at 3335.114 kb on + strand, within Rru_A2891 at 3335.399 kb on + strand, within Rru_A2892 at 3335.413 kb on + strand, within Rru_A2892 at 3335.413 kb on + strand, within Rru_A2892 at 3335.413 kb on + strand, within Rru_A2892 at 3335.413 kb on + strand, within Rru_A2892 at 3335.415 kb on + strand, within Rru_A2892 at 3335.415 kb on + strand, within Rru_A2892 at 3335.416 kb on - strand, within Rru_A2892 at 3335.416 kb on - strand, within Rru_A2892 at 3335.416 kb on - strand, within Rru_A2892 at 3335.416 kb on - strand, within Rru_A2892 at 3335.798 kb on - strand, within Rru_A2892 at 3335.872 kb on + strand, within Rru_A2892 at 3335.883 kb on + strand, within Rru_A2892 at 3335.884 kb on - strand, within Rru_A2892 at 3335.952 kb on + strand, within Rru_A2892 at 3335.952 kb on + strand, within Rru_A2892 at 3335.952 kb on + strand, within Rru_A2892 at 3335.953 kb on - strand, within Rru_A2892 at 3335.953 kb on - strand, within Rru_A2892 at 3336.284 kb on + strand, within Rru_A2893 at 3336.618 kb on + strand, within Rru_A2893 at 3336.618 kb on + strand, within Rru_A2893 at 3336.619 kb on - strand, within Rru_A2893 at 3336.619 kb on - strand, within Rru_A2893 at 3336.619 kb on - strand, within Rru_A2893 at 3336.959 kb on + strand at 3336.959 kb on + strand at 3336.959 kb on + strand at 3336.959 kb on + strand at 3336.959 kb on + strand at 3336.959 kb on + strand at 3336.960 kb on - strand at 3336.960 kb on - strand at 3336.960 kb on - strand at 3336.960 kb on - strand at 3337.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,334,383 + Rru_A2890 0.61 +0.4 3,334,383 + Rru_A2890 0.61 -0.0 3,334,384 - Rru_A2890 0.61 -0.0 3,334,384 - Rru_A2890 0.61 -1.2 3,334,384 - Rru_A2890 0.61 +0.6 3,334,780 + Rru_A2891 0.32 -0.5 3,334,780 + Rru_A2891 0.32 +0.2 3,334,780 + Rru_A2891 0.32 -0.2 3,334,781 - Rru_A2891 0.32 -1.9 3,334,781 - Rru_A2891 0.32 -1.2 3,334,781 - Rru_A2891 0.32 -2.0 3,334,801 + Rru_A2891 0.35 -2.5 3,334,856 + Rru_A2891 0.43 -0.1 3,334,856 + Rru_A2891 0.43 +0.6 3,334,856 + Rru_A2891 0.43 +0.5 3,334,857 - Rru_A2891 0.43 -1.1 3,334,857 - Rru_A2891 0.43 -0.5 3,334,857 - Rru_A2891 0.43 -0.8 3,334,867 + Rru_A2891 0.45 -1.0 3,334,867 + Rru_A2891 0.45 -0.1 3,334,867 + Rru_A2891 0.45 -0.0 3,334,868 - Rru_A2891 0.45 +0.3 3,334,868 - Rru_A2891 0.45 -0.1 3,334,898 + Rru_A2891 0.49 -0.7 3,334,898 + Rru_A2891 0.49 -1.9 3,334,899 - Rru_A2891 0.49 -0.7 3,334,899 - Rru_A2891 0.49 -2.6 3,334,952 + Rru_A2891 0.57 -0.2 3,335,051 + Rru_A2891 0.71 +2.3 3,335,051 + Rru_A2891 0.71 +0.2 3,335,114 + Rru_A2891 0.80 +0.3 3,335,399 + Rru_A2892 0.14 -1.2 3,335,413 + Rru_A2892 0.15 +0.1 3,335,413 + Rru_A2892 0.15 -0.9 3,335,413 + Rru_A2892 0.15 +1.4 3,335,413 + Rru_A2892 0.15 +0.6 3,335,415 + Rru_A2892 0.16 -0.8 3,335,415 + Rru_A2892 0.16 +0.4 3,335,416 - Rru_A2892 0.16 -0.3 3,335,416 - Rru_A2892 0.16 -0.1 3,335,416 - Rru_A2892 0.16 -0.4 3,335,416 - Rru_A2892 0.16 +0.7 3,335,798 - Rru_A2892 0.60 +0.4 3,335,872 + Rru_A2892 0.69 +1.1 3,335,883 + Rru_A2892 0.70 +0.8 3,335,884 - Rru_A2892 0.70 -0.6 3,335,952 + Rru_A2892 0.78 +0.6 3,335,952 + Rru_A2892 0.78 -1.4 3,335,952 + Rru_A2892 0.78 +1.2 3,335,953 - Rru_A2892 0.78 +0.6 3,335,953 - Rru_A2892 0.78 +1.6 3,336,284 + Rru_A2893 0.17 +1.4 3,336,618 + Rru_A2893 0.56 -1.1 3,336,618 + Rru_A2893 0.56 -1.2 3,336,619 - Rru_A2893 0.56 +1.3 3,336,619 - Rru_A2893 0.56 -0.6 3,336,619 - Rru_A2893 0.56 -1.7 3,336,959 + +0.6 3,336,959 + -1.7 3,336,959 + -0.3 3,336,959 + -1.8 3,336,959 + +0.5 3,336,959 + -0.5 3,336,960 - -0.3 3,336,960 - +0.7 3,336,960 - +0.5 3,336,960 - -1.7 3,337,049 - -1.2
Or see this region's nucleotide sequence