Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2708 and Rru_A2709 are separated by 226 nucleotides Rru_A2709 and Rru_A2710 are separated by 124 nucleotides Rru_A2710 and Rru_A2711 are separated by 19 nucleotides Rru_A2711 and Rru_A2712 overlap by 16 nucleotides
Rru_A2708: Rru_A2708 - hypothetical protein (NCBI), at 3,130,801 to 3,131,172
_A2708
Rru_A2709: Rru_A2709 - Thioesterase superfamily (NCBI), at 3,131,399 to 3,131,851
_A2709
Rru_A2710: Rru_A2710 - Gram negative topoisomerase IV, subunit B (NCBI), at 3,131,976 to 3,133,973
_A2710
Rru_A2711: Rru_A2711 - GCN5-related N-acetyltransferase (NCBI), at 3,133,993 to 3,134,505
_A2711
Rru_A2712: Rru_A2712 - Transcriptional Regulator, TetR family (NCBI), at 3,134,490 to 3,135,110
_A2712
Position (kb)
3131
3132
3133
3134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3131.278 kb on + strand at 3131.278 kb on + strand at 3131.279 kb on - strand at 3131.574 kb on + strand, within Rru_A2709 at 3131.574 kb on + strand, within Rru_A2709 at 3131.575 kb on - strand, within Rru_A2709 at 3131.914 kb on + strand at 3131.914 kb on + strand at 3131.915 kb on - strand at 3131.964 kb on + strand at 3131.964 kb on + strand at 3131.964 kb on + strand at 3131.964 kb on + strand at 3131.964 kb on + strand at 3131.966 kb on + strand at 3131.966 kb on + strand at 3131.966 kb on + strand at 3131.966 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.994 kb on + strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3133.995 kb on - strand at 3134.081 kb on + strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.082 kb on - strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.128 kb on + strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.129 kb on - strand, within Rru_A2711 at 3134.360 kb on + strand, within Rru_A2711 at 3134.361 kb on - strand, within Rru_A2711 at 3134.372 kb on + strand, within Rru_A2711 at 3134.373 kb on - strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.375 kb on + strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711 at 3134.376 kb on - strand, within Rru_A2711
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,131,278 + -0.7 3,131,278 + -0.2 3,131,279 - -1.2 3,131,574 + Rru_A2709 0.39 +0.7 3,131,574 + Rru_A2709 0.39 +0.4 3,131,575 - Rru_A2709 0.39 -0.2 3,131,914 + -0.4 3,131,914 + +0.8 3,131,915 - -1.8 3,131,964 + -0.7 3,131,964 + +0.6 3,131,964 + +0.3 3,131,964 + -1.1 3,131,964 + -0.0 3,131,966 + -0.8 3,131,966 + +0.3 3,131,966 + -0.3 3,131,966 + -0.4 3,133,994 + +1.3 3,133,994 + +1.1 3,133,994 + +0.5 3,133,994 + -0.0 3,133,995 - +1.8 3,133,995 - +0.4 3,133,995 - -0.3 3,133,995 - -3.0 3,134,081 + Rru_A2711 0.17 +0.1 3,134,082 - Rru_A2711 0.17 -0.6 3,134,082 - Rru_A2711 0.17 +0.0 3,134,082 - Rru_A2711 0.17 -0.0 3,134,128 + Rru_A2711 0.26 +0.1 3,134,128 + Rru_A2711 0.26 +1.1 3,134,129 - Rru_A2711 0.27 -0.0 3,134,129 - Rru_A2711 0.27 -0.3 3,134,360 + Rru_A2711 0.72 +0.3 3,134,361 - Rru_A2711 0.72 -1.3 3,134,372 + Rru_A2711 0.74 -0.7 3,134,373 - Rru_A2711 0.74 +0.2 3,134,375 + Rru_A2711 0.74 +1.2 3,134,375 + Rru_A2711 0.74 -0.2 3,134,375 + Rru_A2711 0.74 -0.3 3,134,375 + Rru_A2711 0.74 +1.7 3,134,376 - Rru_A2711 0.75 -0.4 3,134,376 - Rru_A2711 0.75 +0.3 3,134,376 - Rru_A2711 0.75 -0.0 3,134,376 - Rru_A2711 0.75 +1.9
Or see this region's nucleotide sequence