Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2566 and Rru_A2567 are separated by 3 nucleotides Rru_A2567 and Rru_A2568 are separated by 56 nucleotides Rru_A2568 and Rru_A2569 are separated by 29 nucleotides Rru_A2569 and Rru_A2570 are separated by 53 nucleotides
Rru_A2566: Rru_A2566 - hypothetical protein (NCBI), at 2,986,366 to 2,986,620
_A2566
Rru_A2567: Rru_A2567 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 2,986,624 to 2,987,817
_A2567
Rru_A2568: Rru_A2568 - HesB/YadR/YfhF (NCBI), at 2,987,874 to 2,988,215
_A2568
Rru_A2569: Rru_A2569 - Protein of unknown function DUF59 (NCBI), at 2,988,245 to 2,988,643
_A2569
Rru_A2570: Rru_A2570 - Cysteine desulphurases, SufS (NCBI), at 2,988,697 to 2,989,965
_A2570
Position (kb)
2986
2987
2988 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2985.652 kb on + strand at 2985.652 kb on + strand at 2985.652 kb on + strand at 2985.652 kb on + strand at 2985.652 kb on + strand at 2985.653 kb on - strand at 2985.653 kb on - strand at 2985.653 kb on - strand at 2985.653 kb on - strand at 2985.653 kb on - strand at 2985.653 kb on - strand at 2985.705 kb on + strand at 2985.746 kb on - strand at 2985.874 kb on + strand at 2985.885 kb on + strand at 2985.890 kb on - strand at 2985.890 kb on - strand at 2985.952 kb on + strand at 2986.021 kb on + strand at 2986.022 kb on - strand at 2986.022 kb on - strand at 2986.022 kb on - strand at 2986.031 kb on + strand at 2986.031 kb on + strand at 2986.032 kb on - strand at 2986.032 kb on - strand at 2986.032 kb on - strand at 2986.033 kb on + strand at 2986.033 kb on + strand at 2986.033 kb on + strand at 2986.033 kb on + strand at 2986.034 kb on - strand at 2986.034 kb on - strand at 2986.034 kb on - strand at 2986.116 kb on - strand at 2986.116 kb on - strand at 2986.116 kb on - strand at 2986.540 kb on + strand, within Rru_A2566 at 2986.540 kb on + strand, within Rru_A2566 at 2986.540 kb on + strand, within Rru_A2566 at 2986.541 kb on - strand, within Rru_A2566 at 2986.693 kb on + strand at 2986.724 kb on + strand at 2986.724 kb on + strand at 2986.725 kb on - strand at 2986.725 kb on - strand at 2986.932 kb on + strand, within Rru_A2567 at 2986.933 kb on - strand, within Rru_A2567 at 2987.231 kb on + strand, within Rru_A2567 at 2987.243 kb on + strand, within Rru_A2567 at 2987.243 kb on + strand, within Rru_A2567 at 2987.243 kb on + strand, within Rru_A2567 at 2987.243 kb on + strand, within Rru_A2567 at 2987.244 kb on - strand, within Rru_A2567 at 2987.244 kb on - strand, within Rru_A2567 at 2987.410 kb on + strand, within Rru_A2567 at 2987.514 kb on - strand, within Rru_A2567 at 2987.514 kb on - strand, within Rru_A2567 at 2987.564 kb on + strand, within Rru_A2567 at 2987.565 kb on - strand, within Rru_A2567 at 2987.565 kb on - strand, within Rru_A2567 at 2987.594 kb on + strand, within Rru_A2567 at 2987.744 kb on + strand at 2987.808 kb on + strand at 2987.829 kb on + strand at 2987.829 kb on + strand at 2987.834 kb on + strand at 2987.834 kb on + strand at 2987.843 kb on - strand at 2988.235 kb on - strand at 2988.254 kb on - strand at 2988.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,985,652 + -0.0 2,985,652 + -0.4 2,985,652 + -1.1 2,985,652 + +0.3 2,985,652 + +0.0 2,985,653 - -0.2 2,985,653 - -0.1 2,985,653 - +0.5 2,985,653 - -0.7 2,985,653 - -0.2 2,985,653 - +0.7 2,985,705 + +0.2 2,985,746 - -0.1 2,985,874 + -3.0 2,985,885 + +0.6 2,985,890 - -1.1 2,985,890 - -0.3 2,985,952 + +0.8 2,986,021 + +0.4 2,986,022 - -0.5 2,986,022 - -0.4 2,986,022 - -0.2 2,986,031 + -0.1 2,986,031 + -1.5 2,986,032 - +0.0 2,986,032 - +1.6 2,986,032 - +1.0 2,986,033 + +0.4 2,986,033 + -0.1 2,986,033 + +0.8 2,986,033 + +0.4 2,986,034 - -1.2 2,986,034 - -0.1 2,986,034 - +0.4 2,986,116 - -0.6 2,986,116 - +0.4 2,986,116 - +0.6 2,986,540 + Rru_A2566 0.68 +0.4 2,986,540 + Rru_A2566 0.68 -2.3 2,986,540 + Rru_A2566 0.68 +0.9 2,986,541 - Rru_A2566 0.69 -0.4 2,986,693 + -0.2 2,986,724 + +0.4 2,986,724 + -1.5 2,986,725 - -0.0 2,986,725 - +0.3 2,986,932 + Rru_A2567 0.26 +0.7 2,986,933 - Rru_A2567 0.26 -0.1 2,987,231 + Rru_A2567 0.51 +0.4 2,987,243 + Rru_A2567 0.52 +0.1 2,987,243 + Rru_A2567 0.52 +1.3 2,987,243 + Rru_A2567 0.52 -0.5 2,987,243 + Rru_A2567 0.52 -2.0 2,987,244 - Rru_A2567 0.52 -2.1 2,987,244 - Rru_A2567 0.52 +1.0 2,987,410 + Rru_A2567 0.66 -2.3 2,987,514 - Rru_A2567 0.75 +1.0 2,987,514 - Rru_A2567 0.75 +0.4 2,987,564 + Rru_A2567 0.79 +0.3 2,987,565 - Rru_A2567 0.79 +1.1 2,987,565 - Rru_A2567 0.79 -1.4 2,987,594 + Rru_A2567 0.81 -2.6 2,987,744 + -0.2 2,987,808 + -0.7 2,987,829 + +0.7 2,987,829 + +0.3 2,987,834 + -0.1 2,987,834 + -1.8 2,987,843 - -0.4 2,988,235 - +0.2 2,988,254 - +0.2 2,988,662 - +0.4
Or see this region's nucleotide sequence