Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2439

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2436 and Rru_A2437 are separated by 28 nucleotidesRru_A2437 and Rru_A2438 are separated by 8 nucleotidesRru_A2438 and Rru_A2439 are separated by 1 nucleotidesRru_A2439 and Rru_A2440 are separated by 39 nucleotidesRru_A2440 and Rru_A2441 are separated by 426 nucleotides Rru_A2436: Rru_A2436 - Leucyltransferase (NCBI), at 2,834,821 to 2,835,462 _A2436 Rru_A2437: Rru_A2437 - cellulase-like protein (NCBI), at 2,835,491 to 2,835,982 _A2437 Rru_A2438: Rru_A2438 - Mammalian cell entry related (NCBI), at 2,835,991 to 2,836,446 _A2438 Rru_A2439: Rru_A2439 - Mammalian cell entry related (NCBI), at 2,836,448 to 2,837,263 _A2439 Rru_A2440: Rru_A2440 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI), at 2,837,303 to 2,837,659 _A2440 Rru_A2441: Rru_A2441 - Ribonucleoside-diphosphate reductase (NCBI), at 2,838,086 to 2,841,781 _A2441 Position (kb) 2836 2837 2838Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2835.493 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strandat 2835.986 kb on - strandat 2836.526 kb on - strandat 2836.538 kb on - strand, within Rru_A2439at 2836.538 kb on - strand, within Rru_A2439at 2836.538 kb on - strand, within Rru_A2439at 2836.550 kb on - strand, within Rru_A2439at 2836.562 kb on - strand, within Rru_A2439at 2837.323 kb on - strandat 2837.380 kb on - strand, within Rru_A2440at 2837.380 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.521 kb on - strand, within Rru_A2440at 2837.545 kb on - strand, within Rru_A2440at 2837.587 kb on - strand, within Rru_A2440at 2837.638 kb on - strandat 2837.638 kb on - strandat 2837.638 kb on - strandat 2837.713 kb on - strandat 2837.845 kb on + strandat 2837.865 kb on + strandat 2837.865 kb on + strandat 2837.998 kb on + strandat 2837.998 kb on + strandat 2837.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,835,493 - +0.8
2,835,986 - -0.1
2,835,986 - +2.9
2,835,986 - -1.4
2,836,526 - -0.2
2,836,538 - Rru_A2439 0.11 -0.8
2,836,538 - Rru_A2439 0.11 +0.2
2,836,538 - Rru_A2439 0.11 -0.3
2,836,550 - Rru_A2439 0.12 +0.0
2,836,562 - Rru_A2439 0.14 -1.6
2,837,323 - +0.7
2,837,380 - Rru_A2440 0.22 +0.1
2,837,380 - Rru_A2440 0.22 -2.0
2,837,521 - Rru_A2440 0.61 -1.6
2,837,521 - Rru_A2440 0.61 -0.2
2,837,521 - Rru_A2440 0.61 -1.8
2,837,521 - Rru_A2440 0.61 -1.4
2,837,521 - Rru_A2440 0.61 +0.5
2,837,521 - Rru_A2440 0.61 -1.2
2,837,545 - Rru_A2440 0.68 -2.4
2,837,587 - Rru_A2440 0.80 -0.3
2,837,638 - +0.1
2,837,638 - +0.0
2,837,638 - -0.5
2,837,713 - -0.3
2,837,845 + +0.7
2,837,865 + -0.2
2,837,865 + -1.2
2,837,998 + +0.8
2,837,998 + +0.3
2,837,998 + -1.9

Or see this region's nucleotide sequence