Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2383

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2381 and Rru_A2382 are separated by 39 nucleotidesRru_A2382 and Rru_A2383 overlap by 4 nucleotidesRru_A2383 and Rru_A2384 overlap by 1 nucleotides Rru_A2381: Rru_A2381 - lipocalin-like protein (NCBI), at 2,773,269 to 2,773,874 _A2381 Rru_A2382: Rru_A2382 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,773,914 to 2,774,696 _A2382 Rru_A2383: Rru_A2383 - ABC transporter component (NCBI), at 2,774,693 to 2,775,694 _A2383 Rru_A2384: Rru_A2384 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,775,694 to 2,776,872 _A2384 Position (kb) 2774 2775 2776Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2773.714 kb on + strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.715 kb on - strand, within Rru_A2381at 2773.767 kb on - strand, within Rru_A2381at 2774.560 kb on + strand, within Rru_A2382at 2774.560 kb on + strand, within Rru_A2382at 2774.560 kb on + strand, within Rru_A2382at 2774.561 kb on - strand, within Rru_A2382at 2774.561 kb on - strand, within Rru_A2382at 2775.097 kb on + strand, within Rru_A2383at 2775.098 kb on - strand, within Rru_A2383at 2775.386 kb on + strand, within Rru_A2383at 2775.387 kb on - strand, within Rru_A2383at 2775.447 kb on + strand, within Rru_A2383at 2775.447 kb on + strand, within Rru_A2383at 2775.795 kb on + strandat 2775.795 kb on + strandat 2775.796 kb on - strandat 2776.057 kb on - strand, within Rru_A2384at 2776.082 kb on + strand, within Rru_A2384at 2776.082 kb on + strand, within Rru_A2384at 2776.082 kb on + strand, within Rru_A2384at 2776.082 kb on + strand, within Rru_A2384at 2776.082 kb on + strand, within Rru_A2384at 2776.083 kb on - strand, within Rru_A2384at 2776.379 kb on + strand, within Rru_A2384at 2776.379 kb on + strand, within Rru_A2384at 2776.380 kb on - strand, within Rru_A2384at 2776.380 kb on - strand, within Rru_A2384at 2776.386 kb on + strand, within Rru_A2384at 2776.387 kb on - strand, within Rru_A2384at 2776.387 kb on - strand, within Rru_A2384at 2776.568 kb on + strand, within Rru_A2384at 2776.569 kb on - strand, within Rru_A2384

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,773,714 + Rru_A2381 0.73 -1.2
2,773,715 - Rru_A2381 0.74 -0.9
2,773,715 - Rru_A2381 0.74 +1.0
2,773,715 - Rru_A2381 0.74 -2.2
2,773,767 - Rru_A2381 0.82 +0.1
2,774,560 + Rru_A2382 0.83 -0.5
2,774,560 + Rru_A2382 0.83 +0.3
2,774,560 + Rru_A2382 0.83 -0.3
2,774,561 - Rru_A2382 0.83 -2.0
2,774,561 - Rru_A2382 0.83 +0.2
2,775,097 + Rru_A2383 0.40 +0.4
2,775,098 - Rru_A2383 0.40 -0.2
2,775,386 + Rru_A2383 0.69 +1.3
2,775,387 - Rru_A2383 0.69 +1.1
2,775,447 + Rru_A2383 0.75 +2.1
2,775,447 + Rru_A2383 0.75 -0.7
2,775,795 + +2.6
2,775,795 + -0.0
2,775,796 - -0.1
2,776,057 - Rru_A2384 0.31 -1.0
2,776,082 + Rru_A2384 0.33 -1.4
2,776,082 + Rru_A2384 0.33 +0.5
2,776,082 + Rru_A2384 0.33 +2.2
2,776,082 + Rru_A2384 0.33 -1.6
2,776,082 + Rru_A2384 0.33 -1.6
2,776,083 - Rru_A2384 0.33 -0.1
2,776,379 + Rru_A2384 0.58 -0.5
2,776,379 + Rru_A2384 0.58 -0.4
2,776,380 - Rru_A2384 0.58 +0.3
2,776,380 - Rru_A2384 0.58 +1.2
2,776,386 + Rru_A2384 0.59 -0.2
2,776,387 - Rru_A2384 0.59 -1.1
2,776,387 - Rru_A2384 0.59 -3.3
2,776,568 + Rru_A2384 0.74 -0.5
2,776,569 - Rru_A2384 0.74 -0.2

Or see this region's nucleotide sequence