Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2231

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2230 and Rru_A2231 overlap by 10 nucleotidesRru_A2231 and Rru_A2232 are separated by 286 nucleotides Rru_A2230: Rru_A2230 - Glycosyl transferase, family 9 (NCBI), at 2,589,471 to 2,590,463 _A2230 Rru_A2231: Rru_A2231 - Glycosyl transferase, family 25 (NCBI), at 2,590,454 to 2,591,221 _A2231 Rru_A2232: Rru_A2232 - Two Component Transcriptional Regulator, LuxR family (NCBI), at 2,591,508 to 2,592,146 _A2232 Position (kb) 2590 2591 2592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2590.473 kb on + strandat 2590.473 kb on + strandat 2590.473 kb on + strandat 2590.661 kb on - strand, within Rru_A2231at 2590.661 kb on - strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.731 kb on + strand, within Rru_A2231at 2590.732 kb on - strand, within Rru_A2231at 2590.732 kb on - strand, within Rru_A2231at 2590.756 kb on + strand, within Rru_A2231at 2590.768 kb on - strand, within Rru_A2231at 2590.813 kb on + strand, within Rru_A2231at 2590.850 kb on + strand, within Rru_A2231at 2590.851 kb on - strand, within Rru_A2231at 2591.011 kb on - strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.046 kb on + strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.047 kb on - strand, within Rru_A2231at 2591.073 kb on + strand, within Rru_A2231at 2591.074 kb on - strand, within Rru_A2231at 2591.074 kb on - strand, within Rru_A2231at 2591.266 kb on + strandat 2591.509 kb on + strandat 2591.510 kb on - strandat 2591.510 kb on - strandat 2591.776 kb on + strand, within Rru_A2232at 2591.844 kb on - strand, within Rru_A2232

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,590,473 + -0.3
2,590,473 + +0.3
2,590,473 + -0.1
2,590,661 - Rru_A2231 0.27 +1.4
2,590,661 - Rru_A2231 0.27 -1.0
2,590,731 + Rru_A2231 0.36 -1.3
2,590,731 + Rru_A2231 0.36 +0.2
2,590,731 + Rru_A2231 0.36 -0.0
2,590,731 + Rru_A2231 0.36 -0.1
2,590,732 - Rru_A2231 0.36 -0.2
2,590,732 - Rru_A2231 0.36 +0.3
2,590,756 + Rru_A2231 0.39 -0.9
2,590,768 - Rru_A2231 0.41 +0.2
2,590,813 + Rru_A2231 0.47 +0.8
2,590,850 + Rru_A2231 0.52 -0.2
2,590,851 - Rru_A2231 0.52 -0.2
2,591,011 - Rru_A2231 0.73 +0.1
2,591,046 + Rru_A2231 0.77 +0.7
2,591,046 + Rru_A2231 0.77 -0.3
2,591,046 + Rru_A2231 0.77 -0.7
2,591,046 + Rru_A2231 0.77 +0.1
2,591,046 + Rru_A2231 0.77 -0.1
2,591,046 + Rru_A2231 0.77 -0.6
2,591,046 + Rru_A2231 0.77 +1.1
2,591,047 - Rru_A2231 0.77 +1.6
2,591,047 - Rru_A2231 0.77 +0.4
2,591,047 - Rru_A2231 0.77 +4.1
2,591,073 + Rru_A2231 0.81 -0.3
2,591,074 - Rru_A2231 0.81 -0.1
2,591,074 - Rru_A2231 0.81 -1.3
2,591,266 + +0.6
2,591,509 + +0.4
2,591,510 - -0.2
2,591,510 - +1.2
2,591,776 + Rru_A2232 0.42 -3.1
2,591,844 - Rru_A2232 0.53 +1.2

Or see this region's nucleotide sequence