Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2230 and Rru_A2231 overlap by 10 nucleotides Rru_A2231 and Rru_A2232 are separated by 286 nucleotides
Rru_A2230: Rru_A2230 - Glycosyl transferase, family 9 (NCBI), at 2,589,471 to 2,590,463
_A2230
Rru_A2231: Rru_A2231 - Glycosyl transferase, family 25 (NCBI), at 2,590,454 to 2,591,221
_A2231
Rru_A2232: Rru_A2232 - Two Component Transcriptional Regulator, LuxR family (NCBI), at 2,591,508 to 2,592,146
_A2232
Position (kb)
2590
2591
2592 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2590.473 kb on + strand at 2590.473 kb on + strand at 2590.473 kb on + strand at 2590.661 kb on - strand, within Rru_A2231 at 2590.661 kb on - strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.731 kb on + strand, within Rru_A2231 at 2590.732 kb on - strand, within Rru_A2231 at 2590.732 kb on - strand, within Rru_A2231 at 2590.756 kb on + strand, within Rru_A2231 at 2590.768 kb on - strand, within Rru_A2231 at 2590.813 kb on + strand, within Rru_A2231 at 2590.850 kb on + strand, within Rru_A2231 at 2590.851 kb on - strand, within Rru_A2231 at 2591.011 kb on - strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.046 kb on + strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.047 kb on - strand, within Rru_A2231 at 2591.073 kb on + strand, within Rru_A2231 at 2591.074 kb on - strand, within Rru_A2231 at 2591.074 kb on - strand, within Rru_A2231 at 2591.266 kb on + strand at 2591.509 kb on + strand at 2591.510 kb on - strand at 2591.510 kb on - strand at 2591.776 kb on + strand, within Rru_A2232 at 2591.844 kb on - strand, within Rru_A2232
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,590,473 + -0.3 2,590,473 + +0.3 2,590,473 + -0.1 2,590,661 - Rru_A2231 0.27 +1.4 2,590,661 - Rru_A2231 0.27 -1.0 2,590,731 + Rru_A2231 0.36 -1.3 2,590,731 + Rru_A2231 0.36 +0.2 2,590,731 + Rru_A2231 0.36 -0.0 2,590,731 + Rru_A2231 0.36 -0.1 2,590,732 - Rru_A2231 0.36 -0.2 2,590,732 - Rru_A2231 0.36 +0.3 2,590,756 + Rru_A2231 0.39 -0.9 2,590,768 - Rru_A2231 0.41 +0.2 2,590,813 + Rru_A2231 0.47 +0.8 2,590,850 + Rru_A2231 0.52 -0.2 2,590,851 - Rru_A2231 0.52 -0.2 2,591,011 - Rru_A2231 0.73 +0.1 2,591,046 + Rru_A2231 0.77 +0.7 2,591,046 + Rru_A2231 0.77 -0.3 2,591,046 + Rru_A2231 0.77 -0.7 2,591,046 + Rru_A2231 0.77 +0.1 2,591,046 + Rru_A2231 0.77 -0.1 2,591,046 + Rru_A2231 0.77 -0.6 2,591,046 + Rru_A2231 0.77 +1.1 2,591,047 - Rru_A2231 0.77 +1.6 2,591,047 - Rru_A2231 0.77 +0.4 2,591,047 - Rru_A2231 0.77 +4.1 2,591,073 + Rru_A2231 0.81 -0.3 2,591,074 - Rru_A2231 0.81 -0.1 2,591,074 - Rru_A2231 0.81 -1.3 2,591,266 + +0.6 2,591,509 + +0.4 2,591,510 - -0.2 2,591,510 - +1.2 2,591,776 + Rru_A2232 0.42 -3.1 2,591,844 - Rru_A2232 0.53 +1.2
Or see this region's nucleotide sequence