Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1896 and Rru_A1897 overlap by 4 nucleotides Rru_A1897 and Rru_A1898 are separated by 232 nucleotides
Rru_A1896: Rru_A1896 - Anthranilate phosphoribosyl transferase (NCBI), at 2,197,727 to 2,198,770
_A1896
Rru_A1897: Rru_A1897 - Indole-3-glycerol-phosphate synthase (NCBI), at 2,198,767 to 2,199,558
_A1897
Rru_A1898: Rru_A1898 - SOS-response transcriptional repressor, LexA (NCBI), at 2,199,791 to 2,200,546
_A1898
Position (kb)
2198
2199
2200 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2198.015 kb on + strand, within Rru_A1896 at 2198.015 kb on + strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.016 kb on - strand, within Rru_A1896 at 2198.017 kb on + strand, within Rru_A1896 at 2198.018 kb on - strand, within Rru_A1896 at 2198.218 kb on + strand, within Rru_A1896 at 2198.218 kb on + strand, within Rru_A1896 at 2198.218 kb on + strand, within Rru_A1896 at 2198.219 kb on - strand, within Rru_A1896 at 2198.219 kb on - strand, within Rru_A1896 at 2199.014 kb on - strand, within Rru_A1897 at 2199.061 kb on + strand, within Rru_A1897 at 2199.062 kb on - strand, within Rru_A1897 at 2199.062 kb on - strand, within Rru_A1897 at 2199.062 kb on - strand, within Rru_A1897 at 2199.062 kb on - strand, within Rru_A1897 at 2199.349 kb on - strand, within Rru_A1897 at 2199.349 kb on - strand, within Rru_A1897 at 2199.809 kb on + strand at 2199.810 kb on - strand at 2200.143 kb on + strand, within Rru_A1898 at 2200.143 kb on + strand, within Rru_A1898 at 2200.143 kb on + strand, within Rru_A1898 at 2200.487 kb on + strand at 2200.488 kb on - strand at 2200.541 kb on + strand at 2200.541 kb on + strand at 2200.541 kb on + strand at 2200.542 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 2,198,015 + Rru_A1896 0.28 -3.9 2,198,015 + Rru_A1896 0.28 +0.9 2,198,016 - Rru_A1896 0.28 -2.4 2,198,016 - Rru_A1896 0.28 -3.5 2,198,016 - Rru_A1896 0.28 -1.6 2,198,016 - Rru_A1896 0.28 -2.9 2,198,016 - Rru_A1896 0.28 +0.2 2,198,016 - Rru_A1896 0.28 -2.1 2,198,017 + Rru_A1896 0.28 -0.3 2,198,018 - Rru_A1896 0.28 -2.5 2,198,218 + Rru_A1896 0.47 -2.1 2,198,218 + Rru_A1896 0.47 -2.2 2,198,218 + Rru_A1896 0.47 -1.3 2,198,219 - Rru_A1896 0.47 -2.0 2,198,219 - Rru_A1896 0.47 -1.0 2,199,014 - Rru_A1897 0.31 -0.5 2,199,061 + Rru_A1897 0.37 -2.8 2,199,062 - Rru_A1897 0.37 -2.9 2,199,062 - Rru_A1897 0.37 -1.7 2,199,062 - Rru_A1897 0.37 -4.5 2,199,062 - Rru_A1897 0.37 -1.1 2,199,349 - Rru_A1897 0.73 -1.7 2,199,349 - Rru_A1897 0.73 -1.6 2,199,809 + -0.7 2,199,810 - +0.9 2,200,143 + Rru_A1898 0.47 +0.8 2,200,143 + Rru_A1898 0.47 +0.8 2,200,143 + Rru_A1898 0.47 +0.9 2,200,487 + -0.3 2,200,488 - +1.5 2,200,541 + +3.2 2,200,541 + +0.0 2,200,541 + +1.6 2,200,542 - +0.1
Or see this region's nucleotide sequence