Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1316

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1314 and Rru_A1315 are separated by 11 nucleotidesRru_A1315 and Rru_A1316 are separated by 316 nucleotidesRru_A1316 and Rru_A1317 are separated by 104 nucleotides Rru_A1314: Rru_A1314 - hypothetical protein (NCBI), at 1,551,313 to 1,551,972 _A1314 Rru_A1315: Rru_A1315 - Sterol-binding (NCBI), at 1,551,984 to 1,552,283 _A1315 Rru_A1316: Rru_A1316 - AMP-dependent synthetase and ligase (NCBI), at 1,552,600 to 1,554,240 _A1316 Rru_A1317: Rru_A1317 - Electron-transferring-flavoproteindehydrogenase (NCBI), at 1,554,345 to 1,555,970 _A1317 Position (kb) 1552 1553 1554 1555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1551.652 kb on - strand, within Rru_A1314at 1551.735 kb on - strand, within Rru_A1314at 1551.985 kb on + strandat 1552.095 kb on + strand, within Rru_A1315at 1552.095 kb on + strand, within Rru_A1315at 1552.095 kb on + strand, within Rru_A1315at 1552.095 kb on + strand, within Rru_A1315at 1552.095 kb on + strand, within Rru_A1315at 1552.096 kb on - strand, within Rru_A1315at 1552.096 kb on - strand, within Rru_A1315at 1552.096 kb on - strand, within Rru_A1315at 1552.096 kb on - strand, within Rru_A1315at 1552.096 kb on - strand, within Rru_A1315at 1552.315 kb on + strandat 1552.315 kb on + strandat 1552.316 kb on - strandat 1552.335 kb on + strandat 1552.337 kb on + strandat 1552.338 kb on - strandat 1552.342 kb on + strandat 1552.348 kb on + strandat 1552.379 kb on + strandat 1552.426 kb on + strandat 1552.456 kb on - strandat 1552.468 kb on + strandat 1552.534 kb on + strandat 1552.534 kb on + strandat 1552.535 kb on - strandat 1552.597 kb on + strandat 1552.597 kb on + strandat 1552.597 kb on + strandat 1552.597 kb on + strandat 1552.598 kb on - strandat 1552.598 kb on - strandat 1552.604 kb on + strandat 1552.843 kb on + strand, within Rru_A1316at 1552.843 kb on + strand, within Rru_A1316at 1552.843 kb on + strand, within Rru_A1316at 1552.843 kb on + strand, within Rru_A1316at 1552.844 kb on - strand, within Rru_A1316at 1552.844 kb on - strand, within Rru_A1316at 1552.844 kb on - strand, within Rru_A1316at 1552.846 kb on + strand, within Rru_A1316at 1552.847 kb on - strand, within Rru_A1316at 1552.847 kb on - strand, within Rru_A1316at 1552.847 kb on - strand, within Rru_A1316at 1552.918 kb on - strand, within Rru_A1316at 1553.074 kb on + strand, within Rru_A1316at 1553.085 kb on - strand, within Rru_A1316at 1553.085 kb on - strand, within Rru_A1316at 1553.085 kb on - strand, within Rru_A1316at 1553.155 kb on + strand, within Rru_A1316at 1553.155 kb on + strand, within Rru_A1316at 1553.155 kb on + strand, within Rru_A1316at 1553.155 kb on + strand, within Rru_A1316at 1553.155 kb on + strand, within Rru_A1316at 1553.156 kb on - strand, within Rru_A1316at 1553.156 kb on - strand, within Rru_A1316at 1553.156 kb on - strand, within Rru_A1316at 1553.156 kb on - strand, within Rru_A1316at 1553.156 kb on - strand, within Rru_A1316at 1553.195 kb on - strand, within Rru_A1316at 1553.195 kb on - strand, within Rru_A1316at 1553.195 kb on - strand, within Rru_A1316at 1553.268 kb on + strand, within Rru_A1316at 1553.268 kb on + strand, within Rru_A1316at 1553.798 kb on - strand, within Rru_A1316at 1553.798 kb on - strand, within Rru_A1316at 1554.203 kb on - strandat 1554.203 kb on - strandat 1554.203 kb on - strandat 1554.243 kb on + strandat 1554.244 kb on - strandat 1554.251 kb on + strandat 1554.252 kb on - strandat 1554.262 kb on - strandat 1554.669 kb on + strand, within Rru_A1317at 1554.669 kb on + strand, within Rru_A1317at 1554.669 kb on + strand, within Rru_A1317at 1554.669 kb on + strand, within Rru_A1317at 1554.669 kb on + strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.670 kb on - strand, within Rru_A1317at 1554.768 kb on + strand, within Rru_A1317at 1554.769 kb on - strand, within Rru_A1317at 1554.769 kb on - strand, within Rru_A1317at 1554.769 kb on - strand, within Rru_A1317at 1554.966 kb on + strand, within Rru_A1317at 1554.967 kb on - strand, within Rru_A1317at 1554.967 kb on - strand, within Rru_A1317at 1555.061 kb on + strand, within Rru_A1317at 1555.061 kb on + strand, within Rru_A1317at 1555.065 kb on + strand, within Rru_A1317at 1555.065 kb on + strand, within Rru_A1317at 1555.065 kb on + strand, within Rru_A1317at 1555.065 kb on + strand, within Rru_A1317at 1555.065 kb on + strand, within Rru_A1317at 1555.066 kb on - strand, within Rru_A1317at 1555.066 kb on - strand, within Rru_A1317at 1555.066 kb on - strand, within Rru_A1317at 1555.084 kb on - strand, within Rru_A1317at 1555.084 kb on - strand, within Rru_A1317at 1555.084 kb on - strand, within Rru_A1317at 1555.116 kb on + strand, within Rru_A1317at 1555.117 kb on - strand, within Rru_A1317at 1555.117 kb on - strand, within Rru_A1317at 1555.134 kb on + strand, within Rru_A1317at 1555.146 kb on + strand, within Rru_A1317at 1555.147 kb on - strand, within Rru_A1317at 1555.230 kb on + strand, within Rru_A1317at 1555.230 kb on + strand, within Rru_A1317

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,551,652 - Rru_A1314 0.51 -0.5
1,551,735 - Rru_A1314 0.64 -4.4
1,551,985 + +0.1
1,552,095 + Rru_A1315 0.37 -1.0
1,552,095 + Rru_A1315 0.37 -0.3
1,552,095 + Rru_A1315 0.37 +0.8
1,552,095 + Rru_A1315 0.37 -0.2
1,552,095 + Rru_A1315 0.37 +0.0
1,552,096 - Rru_A1315 0.37 -0.3
1,552,096 - Rru_A1315 0.37 +0.9
1,552,096 - Rru_A1315 0.37 -1.0
1,552,096 - Rru_A1315 0.37 -0.1
1,552,096 - Rru_A1315 0.37 -0.5
1,552,315 + -0.6
1,552,315 + +0.7
1,552,316 - +0.6
1,552,335 + -1.8
1,552,337 + -0.7
1,552,338 - -0.1
1,552,342 + -0.3
1,552,348 + +0.6
1,552,379 + -0.3
1,552,426 + +0.1
1,552,456 - -0.1
1,552,468 + +0.1
1,552,534 + -0.0
1,552,534 + -0.6
1,552,535 - -1.4
1,552,597 + +0.3
1,552,597 + -0.0
1,552,597 + +0.6
1,552,597 + +0.6
1,552,598 - +0.8
1,552,598 - +1.3
1,552,604 + -2.0
1,552,843 + Rru_A1316 0.15 +0.7
1,552,843 + Rru_A1316 0.15 -0.1
1,552,843 + Rru_A1316 0.15 -0.8
1,552,843 + Rru_A1316 0.15 -0.3
1,552,844 - Rru_A1316 0.15 +0.0
1,552,844 - Rru_A1316 0.15 +0.8
1,552,844 - Rru_A1316 0.15 -0.2
1,552,846 + Rru_A1316 0.15 +0.1
1,552,847 - Rru_A1316 0.15 -0.4
1,552,847 - Rru_A1316 0.15 -1.2
1,552,847 - Rru_A1316 0.15 +0.2
1,552,918 - Rru_A1316 0.19 +1.1
1,553,074 + Rru_A1316 0.29 +0.4
1,553,085 - Rru_A1316 0.30 +1.1
1,553,085 - Rru_A1316 0.30 +0.3
1,553,085 - Rru_A1316 0.30 -0.3
1,553,155 + Rru_A1316 0.34 +0.7
1,553,155 + Rru_A1316 0.34 -0.5
1,553,155 + Rru_A1316 0.34 -3.8
1,553,155 + Rru_A1316 0.34 +0.4
1,553,155 + Rru_A1316 0.34 -0.5
1,553,156 - Rru_A1316 0.34 -0.1
1,553,156 - Rru_A1316 0.34 -0.0
1,553,156 - Rru_A1316 0.34 +0.4
1,553,156 - Rru_A1316 0.34 -0.8
1,553,156 - Rru_A1316 0.34 +0.3
1,553,195 - Rru_A1316 0.36 +1.0
1,553,195 - Rru_A1316 0.36 +0.4
1,553,195 - Rru_A1316 0.36 +1.7
1,553,268 + Rru_A1316 0.41 +0.1
1,553,268 + Rru_A1316 0.41 +0.3
1,553,798 - Rru_A1316 0.73 +1.3
1,553,798 - Rru_A1316 0.73 +1.2
1,554,203 - -0.9
1,554,203 - +0.3
1,554,203 - +1.9
1,554,243 + -0.2
1,554,244 - +2.2
1,554,251 + +0.6
1,554,252 - -0.5
1,554,262 - +1.0
1,554,669 + Rru_A1317 0.20 +0.4
1,554,669 + Rru_A1317 0.20 +0.7
1,554,669 + Rru_A1317 0.20 -1.6
1,554,669 + Rru_A1317 0.20 +0.2
1,554,669 + Rru_A1317 0.20 +2.2
1,554,670 - Rru_A1317 0.20 +0.7
1,554,670 - Rru_A1317 0.20 +0.9
1,554,670 - Rru_A1317 0.20 +0.3
1,554,670 - Rru_A1317 0.20 +0.7
1,554,670 - Rru_A1317 0.20 +0.3
1,554,670 - Rru_A1317 0.20 -0.9
1,554,670 - Rru_A1317 0.20 -0.6
1,554,670 - Rru_A1317 0.20 +0.4
1,554,670 - Rru_A1317 0.20 -1.3
1,554,768 + Rru_A1317 0.26 -0.4
1,554,769 - Rru_A1317 0.26 +0.5
1,554,769 - Rru_A1317 0.26 -0.5
1,554,769 - Rru_A1317 0.26 +0.5
1,554,966 + Rru_A1317 0.38 -1.1
1,554,967 - Rru_A1317 0.38 +1.0
1,554,967 - Rru_A1317 0.38 +0.3
1,555,061 + Rru_A1317 0.44 +0.6
1,555,061 + Rru_A1317 0.44 -0.8
1,555,065 + Rru_A1317 0.44 +0.4
1,555,065 + Rru_A1317 0.44 -0.2
1,555,065 + Rru_A1317 0.44 +1.6
1,555,065 + Rru_A1317 0.44 +0.2
1,555,065 + Rru_A1317 0.44 +0.6
1,555,066 - Rru_A1317 0.44 +0.8
1,555,066 - Rru_A1317 0.44 -0.2
1,555,066 - Rru_A1317 0.44 +0.6
1,555,084 - Rru_A1317 0.45 +0.2
1,555,084 - Rru_A1317 0.45 +0.6
1,555,084 - Rru_A1317 0.45 +1.3
1,555,116 + Rru_A1317 0.47 +0.9
1,555,117 - Rru_A1317 0.47 +0.1
1,555,117 - Rru_A1317 0.47 -0.7
1,555,134 + Rru_A1317 0.49 +0.3
1,555,146 + Rru_A1317 0.49 +0.9
1,555,147 - Rru_A1317 0.49 -0.4
1,555,230 + Rru_A1317 0.54 +2.5
1,555,230 + Rru_A1317 0.54 +1.4

Or see this region's nucleotide sequence