Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1105

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1104 and Rru_A1105 are separated by 118 nucleotidesRru_A1105 and Rru_A1106 are separated by 102 nucleotides Rru_A1104: Rru_A1104 - Phosphoserine aminotransferase, Methanosarcina type (NCBI), at 1,296,596 to 1,297,750 _A1104 Rru_A1105: Rru_A1105 - tRNA synthetase, class II (G, H, P and S) (NCBI), at 1,297,869 to 1,299,023 _A1105 Rru_A1106: Rru_A1106 - Adenylosuccinate synthase (NCBI), at 1,299,126 to 1,300,415 _A1106 Position (kb) 1297 1298 1299 1300Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1297.846 kb on + strandat 1297.998 kb on + strand, within Rru_A1105at 1298.199 kb on + strand, within Rru_A1105at 1298.694 kb on + strand, within Rru_A1105at 1298.694 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105at 1298.811 kb on + strand, within Rru_A1105at 1298.811 kb on + strand, within Rru_A1105at 1298.811 kb on + strand, within Rru_A1105at 1298.811 kb on + strand, within Rru_A1105at 1298.811 kb on + strand, within Rru_A1105at 1298.813 kb on + strand, within Rru_A1105

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,297,846 + +2.7
1,297,998 + Rru_A1105 0.11 -3.2
1,298,199 + Rru_A1105 0.29 -1.5
1,298,694 + Rru_A1105 0.71 -2.9
1,298,694 + Rru_A1105 0.71 -2.2
1,298,696 + Rru_A1105 0.72 +0.7
1,298,696 + Rru_A1105 0.72 -3.4
1,298,696 + Rru_A1105 0.72 -5.3
1,298,811 + Rru_A1105 0.82 -1.2
1,298,811 + Rru_A1105 0.82 -0.5
1,298,811 + Rru_A1105 0.82 -2.0
1,298,811 + Rru_A1105 0.82 +0.0
1,298,811 + Rru_A1105 0.82 -3.2
1,298,813 + Rru_A1105 0.82 -0.6

Or see this region's nucleotide sequence