Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0876

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0873 and Rru_A0874 are separated by 38 nucleotidesRru_A0874 and Rru_A0875 are separated by 82 nucleotidesRru_A0875 and Rru_A0876 are separated by 61 nucleotidesRru_A0876 and Rru_A0877 are separated by 552 nucleotides Rru_A0873: Rru_A0873 - hypothetical protein (NCBI), at 1,043,594 to 1,045,147 _A0873 Rru_A0874: Rru_A0874 - hypothetical protein (NCBI), at 1,045,186 to 1,045,488 _A0874 Rru_A0875: Rru_A0875 - hypothetical protein (NCBI), at 1,045,571 to 1,045,894 _A0875 Rru_A0876: Rru_A0876 - hypothetical protein (NCBI), at 1,045,956 to 1,046,273 _A0876 Rru_A0877: Rru_A0877 - hypothetical protein (NCBI), at 1,046,826 to 1,047,863 _A0877 Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1at 1044.998 kb on - strandat 1045.187 kb on + strandat 1045.199 kb on + strandat 1045.200 kb on - strandat 1045.301 kb on - strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.362 kb on - strand, within Rru_A0874at 1045.444 kb on + strand, within Rru_A0874at 1045.473 kb on + strandat 1045.474 kb on - strandat 1045.508 kb on + strandat 1045.539 kb on + strandat 1045.539 kb on + strandat 1045.539 kb on + strandat 1045.540 kb on - strandat 1045.555 kb on - strandat 1045.555 kb on - strandat 1045.555 kb on - strandat 1046.013 kb on - strand, within Rru_A0876at 1046.280 kb on + strandat 1046.390 kb on + strandat 1046.651 kb on + strandat 1046.651 kb on + strandat 1046.651 kb on + strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.827 kb on + strandat 1046.827 kb on + strandat 1047.023 kb on - strand, within Rru_A0877

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,044,998 - -1.1
1,045,187 + -0.3
1,045,199 + +0.5
1,045,200 - +0.8
1,045,301 - Rru_A0874 0.38 +0.3
1,045,361 + Rru_A0874 0.58 +1.6
1,045,361 + Rru_A0874 0.58 +1.5
1,045,361 + Rru_A0874 0.58 +0.7
1,045,362 - Rru_A0874 0.58 -0.1
1,045,444 + Rru_A0874 0.85 -0.5
1,045,473 + -0.7
1,045,474 - -0.2
1,045,508 + +1.3
1,045,539 + -0.3
1,045,539 + +1.5
1,045,539 + -1.2
1,045,540 - -0.3
1,045,555 - -1.3
1,045,555 - -1.2
1,045,555 - +0.1
1,046,013 - Rru_A0876 0.18 -1.5
1,046,280 + +0.8
1,046,390 + -0.1
1,046,651 + -0.9
1,046,651 + -0.3
1,046,651 + -1.8
1,046,652 - +1.0
1,046,652 - -1.7
1,046,652 - -0.5
1,046,652 - +0.3
1,046,827 + +0.3
1,046,827 + -0.6
1,047,023 - Rru_A0877 0.19 +0.7

Or see this region's nucleotide sequence