Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0858

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0857 and Rru_A0858 are separated by 478 nucleotidesRru_A0858 and Rru_A0859 are separated by 26 nucleotides Rru_A0857: Rru_A0857 - Sulfotransferase (NCBI), at 1,021,052 to 1,021,921 _A0857 Rru_A0858: Rru_A0858 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 1,022,400 to 1,023,947 _A0858 Rru_A0859: Rru_A0859 - Secretion protein HlyD (NCBI), at 1,023,974 to 1,025,182 _A0859 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -3 -2 -1 0 1at 1021.514 kb on + strand, within Rru_A0857at 1021.665 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.720 kb on + strand, within Rru_A0857at 1021.721 kb on - strand, within Rru_A0857at 1021.848 kb on + strandat 1021.848 kb on + strandat 1021.915 kb on + strandat 1021.915 kb on + strandat 1022.249 kb on + strandat 1022.250 kb on - strandat 1022.250 kb on - strandat 1022.250 kb on - strandat 1022.649 kb on + strand, within Rru_A0858at 1022.653 kb on + strand, within Rru_A0858at 1022.654 kb on - strand, within Rru_A0858at 1022.654 kb on - strand, within Rru_A0858at 1022.654 kb on - strand, within Rru_A0858at 1022.741 kb on - strand, within Rru_A0858at 1023.038 kb on + strand, within Rru_A0858at 1023.100 kb on + strand, within Rru_A0858at 1023.427 kb on + strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.428 kb on - strand, within Rru_A0858at 1023.550 kb on + strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1023.551 kb on - strand, within Rru_A0858at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.353 kb on + strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.354 kb on - strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.560 kb on + strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859at 1024.561 kb on - strand, within Rru_A0859

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,021,514 + Rru_A0857 0.53 -0.8
1,021,665 + Rru_A0857 0.70 -0.1
1,021,720 + Rru_A0857 0.77 -0.2
1,021,720 + Rru_A0857 0.77 -0.5
1,021,720 + Rru_A0857 0.77 -2.8
1,021,720 + Rru_A0857 0.77 +0.4
1,021,721 - Rru_A0857 0.77 +0.3
1,021,848 + -0.0
1,021,848 + -0.8
1,021,915 + +0.0
1,021,915 + -0.3
1,022,249 + -0.5
1,022,250 - +0.6
1,022,250 - +0.4
1,022,250 - -0.7
1,022,649 + Rru_A0858 0.16 +0.9
1,022,653 + Rru_A0858 0.16 +0.1
1,022,654 - Rru_A0858 0.16 +0.2
1,022,654 - Rru_A0858 0.16 -1.7
1,022,654 - Rru_A0858 0.16 +1.0
1,022,741 - Rru_A0858 0.22 -0.9
1,023,038 + Rru_A0858 0.41 -0.8
1,023,100 + Rru_A0858 0.45 +0.9
1,023,427 + Rru_A0858 0.66 +1.2
1,023,428 - Rru_A0858 0.66 +0.5
1,023,428 - Rru_A0858 0.66 +0.1
1,023,428 - Rru_A0858 0.66 -0.1
1,023,550 + Rru_A0858 0.74 -0.0
1,023,551 - Rru_A0858 0.74 -1.2
1,023,551 - Rru_A0858 0.74 +0.6
1,023,551 - Rru_A0858 0.74 +0.9
1,023,551 - Rru_A0858 0.74 +0.1
1,024,353 + Rru_A0859 0.31 +0.1
1,024,353 + Rru_A0859 0.31 -0.5
1,024,353 + Rru_A0859 0.31 -0.6
1,024,353 + Rru_A0859 0.31 +0.1
1,024,354 - Rru_A0859 0.31 +0.1
1,024,354 - Rru_A0859 0.31 -0.2
1,024,354 - Rru_A0859 0.31 -0.7
1,024,354 - Rru_A0859 0.31 -0.5
1,024,354 - Rru_A0859 0.31 -0.9
1,024,354 - Rru_A0859 0.31 -0.6
1,024,354 - Rru_A0859 0.31 -2.0
1,024,354 - Rru_A0859 0.31 +0.6
1,024,560 + Rru_A0859 0.48 +1.1
1,024,560 + Rru_A0859 0.48 -1.2
1,024,560 + Rru_A0859 0.48 -1.1
1,024,560 + Rru_A0859 0.48 -0.1
1,024,560 + Rru_A0859 0.48 -0.2
1,024,561 - Rru_A0859 0.49 +0.3
1,024,561 - Rru_A0859 0.49 +0.7
1,024,561 - Rru_A0859 0.49 -0.9

Or see this region's nucleotide sequence