Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0772

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0771 and Rru_A0772 are separated by 232 nucleotidesRru_A0772 and Rru_A0773 are separated by 5 nucleotides Rru_A0771: Rru_A0771 - hypothetical protein (NCBI), at 917,373 to 921,860 _A0771 Rru_A0772: Rru_A0772 - Oxidoreductase/nitrogenase, component 1 (NCBI), at 922,093 to 923,418 _A0772 Rru_A0773: Rru_A0773 - Nitrogenase (NCBI), at 923,424 to 924,887 _A0773 Position (kb) 922 923 924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 921.142 kb on - strand, within Rru_A0771at 921.156 kb on - strand, within Rru_A0771at 921.156 kb on - strand, within Rru_A0771at 921.236 kb on + strand, within Rru_A0771at 921.359 kb on - strand, within Rru_A0771at 921.363 kb on - strand, within Rru_A0771at 921.366 kb on - strand, within Rru_A0771at 921.436 kb on + strandat 921.448 kb on + strandat 921.448 kb on + strandat 921.448 kb on + strandat 921.448 kb on + strandat 921.449 kb on - strandat 921.449 kb on - strandat 921.598 kb on + strandat 921.599 kb on - strandat 921.599 kb on - strandat 921.599 kb on - strandat 921.769 kb on + strandat 921.770 kb on - strandat 921.863 kb on - strandat 921.880 kb on - strandat 921.976 kb on + strandat 922.141 kb on + strandat 922.163 kb on + strandat 922.164 kb on - strandat 922.164 kb on - strandat 922.164 kb on - strandat 922.373 kb on + strand, within Rru_A0772at 922.374 kb on - strand, within Rru_A0772at 922.562 kb on + strand, within Rru_A0772at 922.571 kb on + strand, within Rru_A0772at 922.571 kb on + strand, within Rru_A0772at 922.572 kb on - strand, within Rru_A0772at 922.572 kb on - strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.574 kb on + strand, within Rru_A0772at 922.575 kb on - strand, within Rru_A0772at 922.770 kb on + strand, within Rru_A0772at 922.834 kb on - strand, within Rru_A0772at 923.159 kb on - strand, within Rru_A0772at 923.159 kb on - strand, within Rru_A0772at 923.254 kb on - strand, within Rru_A0772at 923.255 kb on + strand, within Rru_A0772at 923.255 kb on + strand, within Rru_A0772at 923.256 kb on - strand, within Rru_A0772at 923.270 kb on + strand, within Rru_A0772at 923.425 kb on + strandat 923.443 kb on + strandat 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.596 kb on + strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.597 kb on - strand, within Rru_A0773at 923.660 kb on + strand, within Rru_A0773at 923.661 kb on - strand, within Rru_A0773at 923.722 kb on + strand, within Rru_A0773at 923.722 kb on + strand, within Rru_A0773at 923.861 kb on + strand, within Rru_A0773at 923.862 kb on - strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.965 kb on + strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 923.966 kb on - strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.122 kb on + strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.123 kb on - strand, within Rru_A0773at 924.257 kb on + strand, within Rru_A0773

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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921,142 - Rru_A0771 0.84 -0.2
921,156 - Rru_A0771 0.84 +0.4
921,156 - Rru_A0771 0.84 -0.6
921,236 + Rru_A0771 0.86 +0.8
921,359 - Rru_A0771 0.89 -0.8
921,363 - Rru_A0771 0.89 -0.1
921,366 - Rru_A0771 0.89 -0.3
921,436 + -0.9
921,448 + -0.5
921,448 + -0.2
921,448 + -0.1
921,448 + -2.3
921,449 - -0.5
921,449 - +0.1
921,598 + +0.2
921,599 - +0.2
921,599 - -0.5
921,599 - +0.6
921,769 + -0.2
921,770 - +1.2
921,863 - -1.1
921,880 - +0.6
921,976 + +0.4
922,141 + +0.1
922,163 + -0.4
922,164 - -2.0
922,164 - -0.7
922,164 - -0.6
922,373 + Rru_A0772 0.21 +0.0
922,374 - Rru_A0772 0.21 -0.9
922,562 + Rru_A0772 0.35 +0.4
922,571 + Rru_A0772 0.36 -0.4
922,571 + Rru_A0772 0.36 -0.3
922,572 - Rru_A0772 0.36 -1.8
922,572 - Rru_A0772 0.36 -0.4
922,574 + Rru_A0772 0.36 -0.5
922,574 + Rru_A0772 0.36 +0.9
922,574 + Rru_A0772 0.36 -0.3
922,575 - Rru_A0772 0.36 -0.7
922,770 + Rru_A0772 0.51 -0.8
922,834 - Rru_A0772 0.56 -3.2
923,159 - Rru_A0772 0.80 +0.1
923,159 - Rru_A0772 0.80 -0.1
923,254 - Rru_A0772 0.88 +0.5
923,255 + Rru_A0772 0.88 +0.6
923,255 + Rru_A0772 0.88 +0.6
923,256 - Rru_A0772 0.88 +0.1
923,270 + Rru_A0772 0.89 -0.0
923,425 + -0.2
923,443 + +0.1
923,596 + Rru_A0773 0.12 -1.5
923,596 + Rru_A0773 0.12 -0.9
923,596 + Rru_A0773 0.12 +0.3
923,596 + Rru_A0773 0.12 +0.1
923,596 + Rru_A0773 0.12 -1.2
923,596 + Rru_A0773 0.12 -1.7
923,596 + Rru_A0773 0.12 -0.5
923,597 - Rru_A0773 0.12 +0.1
923,597 - Rru_A0773 0.12 +0.3
923,597 - Rru_A0773 0.12 +0.1
923,660 + Rru_A0773 0.16 -0.1
923,661 - Rru_A0773 0.16 -1.1
923,722 + Rru_A0773 0.20 +0.4
923,722 + Rru_A0773 0.20 -0.1
923,861 + Rru_A0773 0.30 +0.0
923,862 - Rru_A0773 0.30 +1.4
923,965 + Rru_A0773 0.37 -0.2
923,965 + Rru_A0773 0.37 -0.6
923,965 + Rru_A0773 0.37 -1.1
923,965 + Rru_A0773 0.37 -0.4
923,965 + Rru_A0773 0.37 -1.8
923,965 + Rru_A0773 0.37 -0.0
923,966 - Rru_A0773 0.37 -0.7
923,966 - Rru_A0773 0.37 -0.0
924,122 + Rru_A0773 0.48 -0.9
924,122 + Rru_A0773 0.48 -0.2
924,122 + Rru_A0773 0.48 -0.9
924,122 + Rru_A0773 0.48 +0.3
924,122 + Rru_A0773 0.48 +0.1
924,123 - Rru_A0773 0.48 -0.6
924,123 - Rru_A0773 0.48 -3.8
924,123 - Rru_A0773 0.48 +0.1
924,123 - Rru_A0773 0.48 -1.6
924,257 + Rru_A0773 0.57 -0.0

Or see this region's nucleotide sequence