Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0691

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0690 and Rru_A0691 are separated by 113 nucleotidesRru_A0691 and Rru_A0692 are separated by 94 nucleotides Rru_A0690: Rru_A0690 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 815,613 to 819,173 _A0690 Rru_A0691: Rru_A0691 - Predicted signal transduction protein (NCBI), at 819,287 to 820,453 _A0691 Rru_A0692: Rru_A0692 - Response regulator receiver domain protein (CheY) (NCBI), at 820,548 to 821,720 _A0692 Position (kb) 819 820 821Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 818.451 kb on + strand, within Rru_A0690at 818.451 kb on + strand, within Rru_A0690at 818.451 kb on + strand, within Rru_A0690at 818.452 kb on - strand, within Rru_A0690at 818.452 kb on - strand, within Rru_A0690at 818.454 kb on - strand, within Rru_A0690at 818.454 kb on - strand, within Rru_A0690at 818.463 kb on - strand, within Rru_A0690at 818.582 kb on + strand, within Rru_A0690at 818.583 kb on - strand, within Rru_A0690at 818.590 kb on - strand, within Rru_A0690at 819.171 kb on + strandat 819.172 kb on - strandat 819.222 kb on - strandat 819.226 kb on + strandat 819.226 kb on + strandat 819.262 kb on + strandat 819.263 kb on - strandat 819.319 kb on + strandat 819.320 kb on - strandat 819.320 kb on - strandat 819.540 kb on - strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.725 kb on + strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.766 kb on + strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691at 820.278 kb on - strand, within Rru_A0691at 820.278 kb on - strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.324 kb on + strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.325 kb on - strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.328 kb on + strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.329 kb on - strand, within Rru_A0691at 820.410 kb on - strandat 820.911 kb on + strand, within Rru_A0692at 820.982 kb on + strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 821.011 kb on - strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.235 kb on - strand, within Rru_A0692at 821.268 kb on + strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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818,451 + Rru_A0690 0.80 -0.4
818,451 + Rru_A0690 0.80 +0.1
818,451 + Rru_A0690 0.80 -0.6
818,452 - Rru_A0690 0.80 -0.0
818,452 - Rru_A0690 0.80 +0.7
818,454 - Rru_A0690 0.80 -1.3
818,454 - Rru_A0690 0.80 +0.5
818,463 - Rru_A0690 0.80 +0.5
818,582 + Rru_A0690 0.83 -0.1
818,583 - Rru_A0690 0.83 +0.6
818,590 - Rru_A0690 0.84 +0.6
819,171 + +0.3
819,172 - -1.2
819,222 - +1.8
819,226 + -0.2
819,226 + -0.2
819,262 + -0.3
819,263 - -1.2
819,319 + -1.2
819,320 - -0.5
819,320 - -0.4
819,540 - Rru_A0691 0.22 +1.6
819,587 + Rru_A0691 0.26 -0.0
819,587 + Rru_A0691 0.26 -1.2
819,587 + Rru_A0691 0.26 +0.5
819,587 + Rru_A0691 0.26 -0.4
819,587 + Rru_A0691 0.26 +0.3
819,588 - Rru_A0691 0.26 -0.7
819,588 - Rru_A0691 0.26 -1.1
819,725 + Rru_A0691 0.38 -0.8
819,726 - Rru_A0691 0.38 -0.2
819,726 - Rru_A0691 0.38 +1.4
819,766 + Rru_A0691 0.41 +0.7
819,767 - Rru_A0691 0.41 +1.4
819,767 - Rru_A0691 0.41 +0.4
820,278 - Rru_A0691 0.85 +1.1
820,278 - Rru_A0691 0.85 +0.2
820,324 + Rru_A0691 0.89 +0.5
820,324 + Rru_A0691 0.89 -2.1
820,324 + Rru_A0691 0.89 -0.7
820,324 + Rru_A0691 0.89 +0.9
820,324 + Rru_A0691 0.89 +0.1
820,325 - Rru_A0691 0.89 +1.5
820,325 - Rru_A0691 0.89 -3.0
820,325 - Rru_A0691 0.89 +1.2
820,328 + Rru_A0691 0.89 +0.1
820,328 + Rru_A0691 0.89 +0.1
820,328 + Rru_A0691 0.89 -1.7
820,328 + Rru_A0691 0.89 -1.7
820,328 + Rru_A0691 0.89 +1.7
820,328 + Rru_A0691 0.89 +0.6
820,328 + Rru_A0691 0.89 +0.2
820,328 + Rru_A0691 0.89 +0.2
820,329 - Rru_A0691 0.89 -2.2
820,329 - Rru_A0691 0.89 -1.0
820,329 - Rru_A0691 0.89 +0.7
820,410 - -1.2
820,911 + Rru_A0692 0.31 +0.4
820,982 + Rru_A0692 0.37 +1.2
820,983 - Rru_A0692 0.37 +0.8
820,983 - Rru_A0692 0.37 +0.9
820,983 - Rru_A0692 0.37 -0.3
820,983 - Rru_A0692 0.37 -0.5
820,998 + Rru_A0692 0.38 +0.9
820,998 + Rru_A0692 0.38 +0.1
821,011 - Rru_A0692 0.39 -0.6
821,234 + Rru_A0692 0.58 +0.6
821,234 + Rru_A0692 0.58 -1.6
821,235 - Rru_A0692 0.59 +0.6
821,268 + Rru_A0692 0.61 +0.9
821,269 - Rru_A0692 0.61 +0.3
821,269 - Rru_A0692 0.61 +0.5
821,269 - Rru_A0692 0.61 +1.2
821,269 - Rru_A0692 0.61 -0.1
821,442 + Rru_A0692 0.76 -1.0
821,442 + Rru_A0692 0.76 +0.1
821,442 + Rru_A0692 0.76 -0.7
821,442 + Rru_A0692 0.76 -0.0
821,442 + Rru_A0692 0.76 -1.1

Or see this region's nucleotide sequence