Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0637

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0635 and Rru_A0636 are separated by 3 nucleotidesRru_A0636 and Rru_A0637 are separated by 414 nucleotidesRru_A0637 and Rru_A0638 are separated by 221 nucleotides Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Rru_A0636: Rru_A0636 - Protein of unknown function DUF485 (NCBI), at 757,818 to 758,126 _A0636 Rru_A0637: Rru_A0637 - hypothetical protein (NCBI), at 758,541 to 758,927 _A0637 Rru_A0638: Rru_A0638 - hypothetical protein (NCBI), at 759,149 to 761,065 _A0638 Position (kb) 758 759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.601 kb on - strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.692 kb on + strandat 757.819 kb on + strandat 757.819 kb on + strandat 757.820 kb on - strandat 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.110 kb on + strandat 758.111 kb on - strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.163 kb on + strandat 758.163 kb on + strandat 758.164 kb on - strandat 758.232 kb on + strandat 758.265 kb on - strandat 758.265 kb on - strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.344 kb on - strandat 758.355 kb on + strandat 758.356 kb on - strandat 758.558 kb on - strandat 758.782 kb on + strand, within Rru_A0637at 758.782 kb on + strand, within Rru_A0637at 758.783 kb on - strand, within Rru_A0637at 758.813 kb on - strand, within Rru_A0637at 759.007 kb on + strandat 759.007 kb on + strandat 759.008 kb on - strandat 759.008 kb on - strandat 759.008 kb on - strandat 759.072 kb on - strandat 759.072 kb on - strandat 759.390 kb on + strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.391 kb on - strand, within Rru_A0638at 759.559 kb on + strand, within Rru_A0638

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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757,544 - Rru_A0635 0.84 -0.1
757,544 - Rru_A0635 0.84 +1.0
757,544 - Rru_A0635 0.84 +0.1
757,544 - Rru_A0635 0.84 -1.9
757,600 + Rru_A0635 0.87 +1.1
757,600 + Rru_A0635 0.87 -0.5
757,600 + Rru_A0635 0.87 -3.2
757,600 + Rru_A0635 0.87 +0.7
757,601 - Rru_A0635 0.87 -0.1
757,639 + Rru_A0635 0.90 -0.4
757,639 + Rru_A0635 0.90 -0.8
757,640 - Rru_A0635 0.90 +0.9
757,640 - Rru_A0635 0.90 +0.6
757,640 - Rru_A0635 0.90 -1.3
757,640 - Rru_A0635 0.90 -1.8
757,692 + +1.3
757,819 + -0.1
757,819 + -4.3
757,820 - +0.7
757,882 + Rru_A0636 0.21 +0.2
757,882 + Rru_A0636 0.21 -0.5
757,882 + Rru_A0636 0.21 +0.9
757,882 + Rru_A0636 0.21 -0.5
757,882 + Rru_A0636 0.21 +0.7
757,883 - Rru_A0636 0.21 +0.2
757,883 - Rru_A0636 0.21 -0.5
757,883 - Rru_A0636 0.21 -2.6
757,883 - Rru_A0636 0.21 -0.3
757,883 - Rru_A0636 0.21 -1.4
757,883 - Rru_A0636 0.21 +0.3
758,017 + Rru_A0636 0.64 -0.5
758,017 + Rru_A0636 0.64 -0.5
758,018 - Rru_A0636 0.65 +0.1
758,018 - Rru_A0636 0.65 +1.4
758,018 - Rru_A0636 0.65 +0.3
758,110 + +1.2
758,111 - +0.1
758,160 + +0.6
758,160 + -0.8
758,160 + +0.3
758,163 + -1.0
758,163 + +0.3
758,164 - -0.3
758,232 + -0.3
758,265 - +0.0
758,265 - -0.4
758,328 + -2.3
758,328 + +0.2
758,328 + -0.5
758,328 + +0.7
758,344 - +0.4
758,355 + -0.3
758,356 - +0.5
758,558 - +0.8
758,782 + Rru_A0637 0.62 -1.6
758,782 + Rru_A0637 0.62 -1.1
758,783 - Rru_A0637 0.63 -0.0
758,813 - Rru_A0637 0.70 -1.5
759,007 + -0.7
759,007 + -3.0
759,008 - -0.3
759,008 - +0.7
759,008 - -0.4
759,072 - -0.9
759,072 - +0.6
759,390 + Rru_A0638 0.13 +0.3
759,391 - Rru_A0638 0.13 +0.7
759,391 - Rru_A0638 0.13 -0.2
759,391 - Rru_A0638 0.13 -0.1
759,391 - Rru_A0638 0.13 +0.7
759,391 - Rru_A0638 0.13 +0.6
759,391 - Rru_A0638 0.13 -0.0
759,559 + Rru_A0638 0.21 -0.7

Or see this region's nucleotide sequence