Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0433

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0432 and Rru_A0433 overlap by 4 nucleotidesRru_A0433 and Rru_A0434 are separated by 40 nucleotides Rru_A0432: Rru_A0432 - 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI), at 504,046 to 505,080 _A0432 Rru_A0433: Rru_A0433 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 505,077 to 506,411 _A0433 Rru_A0434: Rru_A0434 - Organic solvent tolerance protein OstA-like (NCBI), at 506,452 to 509,112 _A0434 Position (kb) 505 506 507Strain fitness (log2 ratio) -1 0 1 2at 504.249 kb on - strand, within Rru_A0432at 504.249 kb on - strand, within Rru_A0432at 504.249 kb on - strand, within Rru_A0432at 505.081 kb on - strandat 506.465 kb on + strandat 506.466 kb on - strandat 506.466 kb on - strandat 506.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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504,249 - Rru_A0432 0.20 +1.9
504,249 - Rru_A0432 0.20 +1.5
504,249 - Rru_A0432 0.20 +1.9
505,081 - +1.0
506,465 + +0.3
506,466 - +0.3
506,466 - +0.7
506,466 - -0.4

Or see this region's nucleotide sequence