Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0395

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0394 and Rru_A0395 are separated by 240 nucleotidesRru_A0395 and Rru_A0396 are separated by 170 nucleotides Rru_A0394: Rru_A0394 - Amino-acid N-acetyltransferase (NCBI), at 469,734 to 470,972 _A0394 Rru_A0395: Rru_A0395 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 471,213 to 472,139 _A0395 Rru_A0396: Rru_A0396 - Diaminopimelate decarboxylase (NCBI), at 472,310 to 473,587 _A0396 Position (kb) 471 472 473Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 470.371 kb on + strand, within Rru_A0394at 470.371 kb on + strand, within Rru_A0394at 470.482 kb on + strand, within Rru_A0394at 470.483 kb on - strand, within Rru_A0394at 470.483 kb on - strand, within Rru_A0394at 470.875 kb on + strandat 470.891 kb on + strandat 470.891 kb on + strandat 470.891 kb on + strandat 471.027 kb on + strandat 471.027 kb on + strandat 471.028 kb on - strandat 471.350 kb on + strand, within Rru_A0395at 471.748 kb on + strand, within Rru_A0395at 471.800 kb on + strand, within Rru_A0395at 471.800 kb on + strand, within Rru_A0395at 471.800 kb on + strand, within Rru_A0395at 471.801 kb on - strand, within Rru_A0395at 471.801 kb on - strand, within Rru_A0395at 471.802 kb on + strand, within Rru_A0395at 471.802 kb on + strand, within Rru_A0395at 471.802 kb on + strand, within Rru_A0395at 471.802 kb on + strand, within Rru_A0395at 471.802 kb on + strand, within Rru_A0395at 471.803 kb on - strand, within Rru_A0395at 471.803 kb on - strand, within Rru_A0395at 471.803 kb on - strand, within Rru_A0395at 471.803 kb on - strand, within Rru_A0395at 471.934 kb on + strand, within Rru_A0395at 471.934 kb on + strand, within Rru_A0395at 471.934 kb on + strand, within Rru_A0395at 471.934 kb on + strand, within Rru_A0395at 471.935 kb on - strand, within Rru_A0395at 471.935 kb on - strand, within Rru_A0395at 472.255 kb on + strandat 472.255 kb on + strandat 472.255 kb on + strandat 472.256 kb on - strandat 472.256 kb on - strandat 472.294 kb on + strandat 472.294 kb on + strandat 472.311 kb on + strandat 472.311 kb on + strandat 472.311 kb on + strandat 472.311 kb on + strandat 472.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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470,371 + Rru_A0394 0.51 -2.1
470,371 + Rru_A0394 0.51 -2.5
470,482 + Rru_A0394 0.60 -1.1
470,483 - Rru_A0394 0.60 -2.4
470,483 - Rru_A0394 0.60 -2.6
470,875 + -3.9
470,891 + -2.9
470,891 + -2.8
470,891 + -6.1
471,027 + +0.0
471,027 + -1.3
471,028 - -0.8
471,350 + Rru_A0395 0.15 -0.4
471,748 + Rru_A0395 0.58 +0.5
471,800 + Rru_A0395 0.63 -2.2
471,800 + Rru_A0395 0.63 +0.7
471,800 + Rru_A0395 0.63 -0.4
471,801 - Rru_A0395 0.63 +0.1
471,801 - Rru_A0395 0.63 +1.5
471,802 + Rru_A0395 0.64 +0.5
471,802 + Rru_A0395 0.64 -0.5
471,802 + Rru_A0395 0.64 +2.6
471,802 + Rru_A0395 0.64 +0.6
471,802 + Rru_A0395 0.64 +0.3
471,803 - Rru_A0395 0.64 +0.5
471,803 - Rru_A0395 0.64 +0.8
471,803 - Rru_A0395 0.64 -0.1
471,803 - Rru_A0395 0.64 +0.5
471,934 + Rru_A0395 0.78 -3.6
471,934 + Rru_A0395 0.78 +0.2
471,934 + Rru_A0395 0.78 -0.9
471,934 + Rru_A0395 0.78 +0.2
471,935 - Rru_A0395 0.78 +1.7
471,935 - Rru_A0395 0.78 +0.1
472,255 + +0.9
472,255 + +0.7
472,255 + +0.5
472,256 - -0.9
472,256 - -0.1
472,294 + +0.4
472,294 + -0.1
472,311 + -1.8
472,311 + +0.2
472,311 + +0.8
472,311 + +0.9
472,312 - -0.1

Or see this region's nucleotide sequence