Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0295 and Rru_A0296 are separated by 298 nucleotides Rru_A0296 and Rru_AR0012 are separated by 224 nucleotides Rru_AR0012 and Rru_AR0013 are separated by 202 nucleotides Rru_AR0013 and Rru_A0297 are separated by 43 nucleotides
Rru_A0295: Rru_A0295 - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 360,898 to 362,253
_A0295
Rru_A0296: Rru_A0296 - hypothetical protein (NCBI), at 362,552 to 362,881
_A0296
Rru_AR0012: Rru_AR0012 - tRNA-Ala (NCBI), at 363,106 to 363,181
_AR0012
Rru_AR0013: Rru_AR0013 - tRNA-Ala (NCBI), at 363,384 to 363,459
_AR0013
Rru_A0297: Rru_A0297 - Putative esterase (NCBI), at 363,503 to 364,531
_A0297
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 362.405 kb on + strand at 362.405 kb on + strand at 362.406 kb on - strand at 362.406 kb on - strand at 362.423 kb on + strand at 362.424 kb on - strand at 362.456 kb on + strand at 362.456 kb on + strand at 362.457 kb on - strand at 362.544 kb on + strand at 362.544 kb on + strand at 362.545 kb on - strand at 362.609 kb on + strand, within Rru_A0296 at 362.610 kb on - strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.880 kb on - strand at 362.880 kb on - strand at 362.880 kb on - strand at 362.974 kb on - strand at 363.291 kb on + strand at 363.392 kb on - strand, within Rru_AR0013 at 363.392 kb on - strand, within Rru_AR0013 at 363.504 kb on + strand at 363.708 kb on + strand, within Rru_A0297 at 363.708 kb on + strand, within Rru_A0297 at 363.709 kb on - strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 362,405 + +0.6 362,405 + -0.5 362,406 - +0.7 362,406 - +0.9 362,423 + -1.5 362,424 - -1.1 362,456 + -1.6 362,456 + +1.2 362,457 - +0.8 362,544 + -1.0 362,544 + -1.3 362,545 - +2.6 362,609 + Rru_A0296 0.17 +0.2 362,610 - Rru_A0296 0.18 -2.1 362,788 + Rru_A0296 0.72 -0.7 362,788 + Rru_A0296 0.72 -0.5 362,880 - -0.5 362,880 - +0.1 362,880 - -1.5 362,974 - -1.1 363,291 + -0.5 363,392 - Rru_AR0013 0.11 +1.0 363,392 - Rru_AR0013 0.11 -1.0 363,504 + +1.3 363,708 + Rru_A0297 0.20 -0.4 363,708 + Rru_A0297 0.20 -0.3 363,709 - Rru_A0297 0.20 -0.4 363,763 + Rru_A0297 0.25 +0.4 363,763 + Rru_A0297 0.25 -2.4 363,763 + Rru_A0297 0.25 -1.6 363,764 - Rru_A0297 0.25 +1.7 363,764 - Rru_A0297 0.25 -0.1 363,765 + Rru_A0297 0.25 +0.3 363,765 + Rru_A0297 0.25 +0.2 363,765 + Rru_A0297 0.25 -0.1 363,765 + Rru_A0297 0.25 +2.1 363,765 + Rru_A0297 0.25 -0.2 363,765 + Rru_A0297 0.25 +0.4 363,765 + Rru_A0297 0.25 +0.5 363,765 + Rru_A0297 0.25 -2.2 363,766 - Rru_A0297 0.26 -1.5 363,766 - Rru_A0297 0.26 -1.2 363,766 - Rru_A0297 0.26 -0.1 363,766 - Rru_A0297 0.26 -0.1 363,766 - Rru_A0297 0.26 -0.4 363,766 - Rru_A0297 0.26 -0.1 363,766 - Rru_A0297 0.26 -0.3 363,766 - Rru_A0297 0.26 -0.6 363,766 - Rru_A0297 0.26 -0.3 363,766 - Rru_A0297 0.26 +1.3
Or see this region's nucleotide sequence