Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0259

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0258 and Rru_A0259 are separated by 109 nucleotidesRru_A0259 and Rru_A0260 overlap by 8 nucleotidesRru_A0260 and Rru_A0261 are separated by 103 nucleotides Rru_A0258: Rru_A0258 - Peptidase M48, Ste24p (NCBI), at 319,389 to 320,447 _A0258 Rru_A0259: Rru_A0259 - Carbon starvation protein CstA (NCBI), at 320,557 to 322,602 _A0259 Rru_A0260: Rru_A0260 - Protein of unknown function DUF466 (NCBI), at 322,595 to 322,792 _A0260 Rru_A0261: Rru_A0261 - hypothetical protein (NCBI), at 322,896 to 323,807 _A0261 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 320.220 kb on + strand, within Rru_A0258at 320.250 kb on - strand, within Rru_A0258at 320.250 kb on - strand, within Rru_A0258at 320.280 kb on + strand, within Rru_A0258at 320.280 kb on + strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.281 kb on - strand, within Rru_A0258at 320.430 kb on - strandat 320.474 kb on + strandat 320.668 kb on - strandat 320.668 kb on - strandat 320.668 kb on - strandat 320.672 kb on - strandat 320.672 kb on - strandat 320.776 kb on + strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.777 kb on - strand, within Rru_A0259at 320.794 kb on + strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.795 kb on - strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.875 kb on + strand, within Rru_A0259at 320.876 kb on - strand, within Rru_A0259at 320.876 kb on - strand, within Rru_A0259at 320.877 kb on + strand, within Rru_A0259at 320.877 kb on + strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 320.878 kb on - strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.135 kb on + strand, within Rru_A0259at 321.136 kb on - strand, within Rru_A0259at 321.136 kb on - strand, within Rru_A0259at 321.164 kb on - strand, within Rru_A0259at 321.241 kb on + strand, within Rru_A0259at 321.242 kb on - strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.289 kb on + strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.290 kb on - strand, within Rru_A0259at 321.291 kb on + strand, within Rru_A0259at 321.292 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.380 kb on - strand, within Rru_A0259at 321.891 kb on + strand, within Rru_A0259at 321.891 kb on + strand, within Rru_A0259at 322.074 kb on + strand, within Rru_A0259at 322.075 kb on - strand, within Rru_A0259at 322.075 kb on - strand, within Rru_A0259at 322.114 kb on + strand, within Rru_A0259at 322.114 kb on + strand, within Rru_A0259at 322.115 kb on - strand, within Rru_A0259at 322.116 kb on + strand, within Rru_A0259at 322.116 kb on + strand, within Rru_A0259at 322.126 kb on - strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.306 kb on + strand, within Rru_A0259at 322.307 kb on - strand, within Rru_A0259at 322.307 kb on - strand, within Rru_A0259at 322.307 kb on - strand, within Rru_A0259at 322.307 kb on - strand, within Rru_A0259at 322.428 kb on + strandat 322.428 kb on + strandat 322.429 kb on - strandat 322.449 kb on + strandat 322.449 kb on + strandat 322.449 kb on + strandat 322.449 kb on + strandat 322.450 kb on - strandat 322.450 kb on - strandat 322.450 kb on - strandat 322.450 kb on - strandat 322.450 kb on - strandat 322.453 kb on + strandat 322.453 kb on + strandat 322.454 kb on - strandat 322.588 kb on - strandat 322.618 kb on - strand, within Rru_A0260at 322.665 kb on - strand, within Rru_A0260at 322.673 kb on + strand, within Rru_A0260at 322.673 kb on + strand, within Rru_A0260at 322.674 kb on - strand, within Rru_A0260at 322.674 kb on - strand, within Rru_A0260at 322.674 kb on - strand, within Rru_A0260at 322.674 kb on - strand, within Rru_A0260at 322.674 kb on - strand, within Rru_A0260at 322.695 kb on - strand, within Rru_A0260at 322.721 kb on + strand, within Rru_A0260at 322.721 kb on + strand, within Rru_A0260at 322.722 kb on - strand, within Rru_A0260at 322.790 kb on + strandat 322.790 kb on + strandat 322.975 kb on + strandat 323.334 kb on + strand, within Rru_A0261at 323.335 kb on - strand, within Rru_A0261at 323.391 kb on + strand, within Rru_A0261

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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320,220 + Rru_A0258 0.78 +1.9
320,250 - Rru_A0258 0.81 -1.3
320,250 - Rru_A0258 0.81 +0.3
320,280 + Rru_A0258 0.84 +0.9
320,280 + Rru_A0258 0.84 +1.8
320,281 - Rru_A0258 0.84 -0.2
320,281 - Rru_A0258 0.84 +1.2
320,281 - Rru_A0258 0.84 +0.2
320,430 - -1.3
320,474 + +1.4
320,668 - -0.1
320,668 - -1.1
320,668 - -0.8
320,672 - -0.1
320,672 - -0.6
320,776 + Rru_A0259 0.11 -0.4
320,777 - Rru_A0259 0.11 -1.0
320,777 - Rru_A0259 0.11 +1.0
320,777 - Rru_A0259 0.11 -0.4
320,794 + Rru_A0259 0.12 -0.4
320,795 - Rru_A0259 0.12 -1.0
320,795 - Rru_A0259 0.12 -0.6
320,795 - Rru_A0259 0.12 -1.5
320,795 - Rru_A0259 0.12 +0.8
320,875 + Rru_A0259 0.16 -0.2
320,875 + Rru_A0259 0.16 -0.1
320,875 + Rru_A0259 0.16 -0.9
320,875 + Rru_A0259 0.16 -0.2
320,876 - Rru_A0259 0.16 -0.3
320,876 - Rru_A0259 0.16 -0.5
320,877 + Rru_A0259 0.16 -0.8
320,877 + Rru_A0259 0.16 +1.4
320,878 - Rru_A0259 0.16 -1.8
320,878 - Rru_A0259 0.16 -0.1
320,878 - Rru_A0259 0.16 -0.8
321,135 + Rru_A0259 0.28 -2.3
321,135 + Rru_A0259 0.28 -0.2
321,135 + Rru_A0259 0.28 -0.4
321,135 + Rru_A0259 0.28 +1.2
321,136 - Rru_A0259 0.28 -2.3
321,136 - Rru_A0259 0.28 -1.8
321,164 - Rru_A0259 0.30 -1.5
321,241 + Rru_A0259 0.33 +1.6
321,242 - Rru_A0259 0.33 +0.0
321,289 + Rru_A0259 0.36 -1.6
321,289 + Rru_A0259 0.36 -1.0
321,289 + Rru_A0259 0.36 -1.4
321,290 - Rru_A0259 0.36 -0.5
321,290 - Rru_A0259 0.36 +2.0
321,290 - Rru_A0259 0.36 +1.2
321,290 - Rru_A0259 0.36 -3.2
321,290 - Rru_A0259 0.36 -0.8
321,290 - Rru_A0259 0.36 -2.6
321,291 + Rru_A0259 0.36 -1.2
321,292 - Rru_A0259 0.36 +2.4
321,380 - Rru_A0259 0.40 -0.6
321,380 - Rru_A0259 0.40 -1.1
321,380 - Rru_A0259 0.40 -3.5
321,380 - Rru_A0259 0.40 +0.0
321,891 + Rru_A0259 0.65 -2.2
321,891 + Rru_A0259 0.65 -1.2
322,074 + Rru_A0259 0.74 -1.9
322,075 - Rru_A0259 0.74 +0.3
322,075 - Rru_A0259 0.74 -0.1
322,114 + Rru_A0259 0.76 -0.4
322,114 + Rru_A0259 0.76 -0.7
322,115 - Rru_A0259 0.76 -0.4
322,116 + Rru_A0259 0.76 -1.4
322,116 + Rru_A0259 0.76 -0.8
322,126 - Rru_A0259 0.77 -0.3
322,306 + Rru_A0259 0.85 -2.8
322,306 + Rru_A0259 0.85 -0.6
322,306 + Rru_A0259 0.85 -2.1
322,306 + Rru_A0259 0.85 +0.2
322,306 + Rru_A0259 0.85 +0.5
322,306 + Rru_A0259 0.85 -2.9
322,307 - Rru_A0259 0.86 -0.5
322,307 - Rru_A0259 0.86 -0.8
322,307 - Rru_A0259 0.86 -0.7
322,307 - Rru_A0259 0.86 -0.4
322,428 + +0.5
322,428 + +0.4
322,429 - +0.3
322,449 + -1.0
322,449 + +0.3
322,449 + -1.3
322,449 + -1.3
322,450 - -3.0
322,450 - -0.5
322,450 - -0.1
322,450 - -0.1
322,450 - -2.6
322,453 + +0.4
322,453 + -1.1
322,454 - -1.5
322,588 - -1.7
322,618 - Rru_A0260 0.12 -0.3
322,665 - Rru_A0260 0.35 -0.4
322,673 + Rru_A0260 0.39 -1.2
322,673 + Rru_A0260 0.39 -1.1
322,674 - Rru_A0260 0.40 +0.4
322,674 - Rru_A0260 0.40 +0.0
322,674 - Rru_A0260 0.40 +0.3
322,674 - Rru_A0260 0.40 -0.6
322,674 - Rru_A0260 0.40 -1.0
322,695 - Rru_A0260 0.51 -0.7
322,721 + Rru_A0260 0.64 -1.6
322,721 + Rru_A0260 0.64 -1.9
322,722 - Rru_A0260 0.64 -1.4
322,790 + +1.2
322,790 + -0.4
322,975 + +0.1
323,334 + Rru_A0261 0.48 +0.8
323,335 - Rru_A0261 0.48 -0.7
323,391 + Rru_A0261 0.54 -0.4

Or see this region's nucleotide sequence