Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0155 and Rru_A0156 are separated by 181 nucleotides Rru_A0156 and Rru_A0157 are separated by 18 nucleotides
Rru_A0155: Rru_A0155 - Transcriptional Regulator, TetR family (NCBI), at 179,583 to 180,251
_A0155
Rru_A0156: Rru_A0156 - Secretion protein HlyD (NCBI), at 180,433 to 181,605
_A0156
Rru_A0157: Rru_A0157 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 181,624 to 183,198
_A0157
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 179.488 kb on + strand at 179.489 kb on - strand at 179.585 kb on - strand at 179.593 kb on + strand at 179.824 kb on - strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.103 kb on + strand, within Rru_A0155 at 180.104 kb on - strand, within Rru_A0155 at 180.262 kb on - strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.313 kb on + strand at 180.314 kb on - strand at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.622 kb on + strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.623 kb on - strand, within Rru_A0156 at 180.624 kb on + strand, within Rru_A0156 at 180.667 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.731 kb on + strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.732 kb on - strand, within Rru_A0156 at 180.736 kb on - strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.192 kb on + strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.193 kb on - strand, within Rru_A0156 at 181.321 kb on + strand, within Rru_A0156 at 181.322 kb on - strand, within Rru_A0156 at 181.604 kb on - strand at 181.806 kb on - strand, within Rru_A0157 at 181.820 kb on + strand, within Rru_A0157 at 181.821 kb on - strand, within Rru_A0157 at 181.821 kb on - strand, within Rru_A0157 at 182.154 kb on - strand, within Rru_A0157 at 182.299 kb on + strand, within Rru_A0157 at 182.299 kb on + strand, within Rru_A0157 at 182.299 kb on + strand, within Rru_A0157 at 182.300 kb on - strand, within Rru_A0157 at 182.300 kb on - strand, within Rru_A0157 at 182.300 kb on - strand, within Rru_A0157 at 182.301 kb on + strand, within Rru_A0157 at 182.301 kb on + strand, within Rru_A0157 at 182.301 kb on + strand, within Rru_A0157 at 182.302 kb on - strand, within Rru_A0157 at 182.302 kb on - strand, within Rru_A0157 at 182.302 kb on - strand, within Rru_A0157 at 182.473 kb on + strand, within Rru_A0157 at 182.474 kb on - strand, within Rru_A0157 at 182.474 kb on - strand, within Rru_A0157 at 182.513 kb on - strand, within Rru_A0157 at 182.513 kb on - strand, within Rru_A0157
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 179,488 + -0.2 179,489 - -0.4 179,585 - -0.6 179,593 + -0.6 179,824 - Rru_A0155 0.36 +0.6 180,043 + Rru_A0155 0.69 -2.8 180,043 + Rru_A0155 0.69 +0.7 180,043 + Rru_A0155 0.69 -2.5 180,043 + Rru_A0155 0.69 +0.3 180,044 - Rru_A0155 0.69 -0.7 180,044 - Rru_A0155 0.69 +0.1 180,103 + Rru_A0155 0.78 +2.1 180,104 - Rru_A0155 0.78 -1.9 180,262 - -0.3 180,279 + +0.6 180,279 + -0.4 180,279 + +0.1 180,280 - +0.1 180,280 - +0.5 180,280 - -0.2 180,280 - +0.5 180,313 + +0.6 180,314 - +1.2 180,622 + Rru_A0156 0.16 +0.0 180,622 + Rru_A0156 0.16 +0.1 180,622 + Rru_A0156 0.16 +0.0 180,623 - Rru_A0156 0.16 +0.4 180,623 - Rru_A0156 0.16 -2.0 180,624 + Rru_A0156 0.16 +1.4 180,667 + Rru_A0156 0.20 -0.8 180,731 + Rru_A0156 0.25 -0.9 180,731 + Rru_A0156 0.25 +0.1 180,731 + Rru_A0156 0.25 -0.7 180,731 + Rru_A0156 0.25 -0.2 180,731 + Rru_A0156 0.25 -0.5 180,732 - Rru_A0156 0.25 +1.4 180,732 - Rru_A0156 0.25 +0.4 180,732 - Rru_A0156 0.25 +2.6 180,732 - Rru_A0156 0.25 -3.6 180,732 - Rru_A0156 0.25 +6.2 180,736 - Rru_A0156 0.26 -0.5 181,192 + Rru_A0156 0.65 +0.3 181,192 + Rru_A0156 0.65 -0.0 181,192 + Rru_A0156 0.65 +0.1 181,192 + Rru_A0156 0.65 +0.6 181,192 + Rru_A0156 0.65 -0.1 181,192 + Rru_A0156 0.65 -0.2 181,192 + Rru_A0156 0.65 +0.4 181,192 + Rru_A0156 0.65 +0.0 181,193 - Rru_A0156 0.65 +0.2 181,193 - Rru_A0156 0.65 -0.1 181,193 - Rru_A0156 0.65 +1.2 181,193 - Rru_A0156 0.65 +0.1 181,193 - Rru_A0156 0.65 +0.6 181,193 - Rru_A0156 0.65 -0.7 181,321 + Rru_A0156 0.76 +1.0 181,322 - Rru_A0156 0.76 +0.3 181,604 - +0.1 181,806 - Rru_A0157 0.12 -1.2 181,820 + Rru_A0157 0.12 +0.5 181,821 - Rru_A0157 0.13 +0.1 181,821 - Rru_A0157 0.13 -0.4 182,154 - Rru_A0157 0.34 -0.2 182,299 + Rru_A0157 0.43 +0.5 182,299 + Rru_A0157 0.43 -2.5 182,299 + Rru_A0157 0.43 -0.4 182,300 - Rru_A0157 0.43 +0.0 182,300 - Rru_A0157 0.43 +0.5 182,300 - Rru_A0157 0.43 +0.5 182,301 + Rru_A0157 0.43 +1.2 182,301 + Rru_A0157 0.43 +0.0 182,301 + Rru_A0157 0.43 +0.4 182,302 - Rru_A0157 0.43 -0.7 182,302 - Rru_A0157 0.43 -0.9 182,302 - Rru_A0157 0.43 -0.3 182,473 + Rru_A0157 0.54 +0.1 182,474 - Rru_A0157 0.54 -1.0 182,474 - Rru_A0157 0.54 +2.6 182,513 - Rru_A0157 0.56 +0.3 182,513 - Rru_A0157 0.56 +0.7
Or see this region's nucleotide sequence