Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0058

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0057 and Rru_A0058 are separated by 53 nucleotidesRru_A0058 and Rru_A0059 are separated by 406 nucleotides Rru_A0057: Rru_A0057 - hypothetical protein (NCBI), at 62,231 to 64,900 _A0057 Rru_A0058: Rru_A0058 - Dihydrokaempferol 4-reductase (NCBI), at 64,954 to 65,955 _A0058 Rru_A0059: Rru_A0059 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (NCBI), at 66,362 to 67,372 _A0059 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 65.532 kb on + strand, within Rru_A0058at 65.628 kb on - strand, within Rru_A0058at 66.042 kb on + strandat 66.063 kb on + strandat 66.063 kb on + strandat 66.065 kb on + strandat 66.065 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
65,532 + Rru_A0058 0.58 -2.0
65,628 - Rru_A0058 0.67 -2.2
66,042 + -1.6
66,063 + +0.4
66,063 + -0.8
66,065 + -1.6
66,065 + -0.2
66,193 + +1.4
66,193 + -0.8
66,193 + -0.1
66,193 + +0.3
66,193 + +0.7

Or see this region's nucleotide sequence