Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2371

Experiment: Nalidixic 0.0078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0078125 mg/ml
2,437,487	-	acrF	Synpcc7942_2369	0.77	-1.3
2,437,499	-	acrF	Synpcc7942_2369	0.78	-1.3
2,437,499	-	acrF	Synpcc7942_2369	0.78	-1.9
2,437,564	-	acrF	Synpcc7942_2369	0.80	-2.9
2,437,564	-	acrF	Synpcc7942_2369	0.80	-1.3
2,437,624	+	acrF	Synpcc7942_2369	0.81	-2.1
2,437,672	+	acrF	Synpcc7942_2369	0.83	-2.9
2,437,681	-	acrF	Synpcc7942_2369	0.83	-1.3
2,437,796	+	acrF	Synpcc7942_2369	0.87	-1.3
2,437,826	+	acrF	Synpcc7942_2369	0.88	-2.3
2,437,834	-	acrF	Synpcc7942_2369	0.88	-0.3
2,437,841	+	acrF	Synpcc7942_2369	0.88	-1.9
2,437,917	-				-2.6
2,437,923	+				-2.6
2,437,923	+				-0.3
2,437,925	-				-3.1
2,437,926	-				-1.9
2,437,967	+				-1.3
2,438,023	+				-2.9
2,438,103	-				-3.3
2,438,139	+				-2.3
2,438,178	+				-0.3
2,438,254	+		Synpcc7942_2370	0.10	+1.1
2,438,259	+		Synpcc7942_2370	0.13	+1.8
2,438,316	+		Synpcc7942_2370	0.40	+0.4
2,438,322	+		Synpcc7942_2370	0.43	-0.4
2,438,348	+		Synpcc7942_2370	0.55	+2.0
2,438,364	+		Synpcc7942_2370	0.63	+2.0
2,438,377	-		Synpcc7942_2370	0.69	-0.3
2,438,377	-		Synpcc7942_2370	0.69	+1.9
2,438,381	+		Synpcc7942_2370	0.71	+1.6
2,438,399	-		Synpcc7942_2370	0.80	-0.3
2,438,400	-		Synpcc7942_2370	0.80	+1.6
2,438,424	+				-1.3
2,438,449	+				-1.9
2,438,515	+				-1.6
2,438,627	-	lpxA	Synpcc7942_2371	0.22	-4.0
2,438,696	+	lpxA	Synpcc7942_2371	0.31	-0.3
2,439,055	+	lpxA	Synpcc7942_2371	0.76	-2.3
2,439,160	+	lpxA	Synpcc7942_2371	0.89	-1.3
2,439,253	+				+0.3
2,439,283	-				-1.3
2,439,283	-				+2.0
2,439,284	+				-2.6
2,439,285	+				-0.3
2,439,293	-				-1.3
2,439,293	-				+5.4
2,439,293	-				-0.3
2,439,293	-				+2.1
2,439,293	-				+7.3
2,439,293	-				+1.5
2,439,307	+				+1.2
2,439,309	-				-2.6
2,439,346	+				-1.3
2,439,351	+				+2.2
2,439,354	-				+2.8
2,439,354	-				+0.7
2,439,354	-				+0.5
2,439,354	-				+3.4
2,439,354	-				-1.3
2,439,354	-				+0.5
2,439,359	-				-1.9
2,439,359	-				-1.3
2,439,382	+				-0.3
2,439,408	+		Synpcc7942_2372	0.12	+0.9
2,439,408	+		Synpcc7942_2372	0.12	+2.1
2,439,416	-		Synpcc7942_2372	0.12	-1.3
2,439,439	+		Synpcc7942_2372	0.14	-2.6
2,439,444	+		Synpcc7942_2372	0.15	-1.6
2,439,447	-		Synpcc7942_2372	0.15	-0.3
2,439,452	-		Synpcc7942_2372	0.16	+4.4
2,439,463	+		Synpcc7942_2372	0.17	+2.3
2,439,463	-		Synpcc7942_2372	0.17	+1.8
2,439,494	-		Synpcc7942_2372	0.20	+1.4
2,439,499	-		Synpcc7942_2372	0.20	-0.3
2,439,577	+		Synpcc7942_2372	0.28	-0.3
2,439,599	+		Synpcc7942_2372	0.30	-1.3
2,439,605	+		Synpcc7942_2372	0.30	-0.9
2,439,632	+		Synpcc7942_2372	0.33	-0.3
2,439,649	-		Synpcc7942_2372	0.34	-1.3
2,439,659	-		Synpcc7942_2372	0.35	-1.9
2,439,683	+		Synpcc7942_2372	0.38	+1.6
2,439,691	-		Synpcc7942_2372	0.38	+2.6
2,439,691	-		Synpcc7942_2372	0.38	-1.3
2,439,691	-		Synpcc7942_2372	0.38	+0.5
2,439,695	+		Synpcc7942_2372	0.39	+2.3
2,439,766	-				-1.3
2,439,770	+		Synpcc7942_2372	0.46	-1.3
2,439,840	+		Synpcc7942_2372	0.53	+4.1
2,439,848	-		Synpcc7942_2372	0.53	-0.3
2,439,857	+		Synpcc7942_2372	0.54	-0.3
2,439,857	+		Synpcc7942_2372	0.54	+0.2
2,439,857	+		Synpcc7942_2372	0.54	-0.3
2,439,865	-		Synpcc7942_2372	0.55	-1.9
2,439,918	+		Synpcc7942_2372	0.60	-2.6
2,439,928	+		Synpcc7942_2372	0.61	-1.9
2,439,940	-		Synpcc7942_2372	0.62	-2.6
2,439,959	-		Synpcc7942_2372	0.64	-0.3
2,439,971	+		Synpcc7942_2372	0.65	+1.1
2,439,997	+		Synpcc7942_2372	0.68	-1.3
2,439,997	+		Synpcc7942_2372	0.68	-0.3
2,440,005	-		Synpcc7942_2372	0.68	+2.3
2,440,034	+		Synpcc7942_2372	0.71	+3.1
2,440,034	+		Synpcc7942_2372	0.71	-2.3
2,440,034	+		Synpcc7942_2372	0.71	+2.4
2,440,042	-		Synpcc7942_2372	0.72	+0.2
2,440,068	+		Synpcc7942_2372	0.74	-1.9
2,440,070	-		Synpcc7942_2372	0.75	-0.3
2,440,070	-		Synpcc7942_2372	0.75	+3.4
2,440,088	+		Synpcc7942_2372	0.76	+2.8
2,440,101	-		Synpcc7942_2372	0.78	+2.2
2,440,139	-		Synpcc7942_2372	0.81	-1.9
2,440,139	-		Synpcc7942_2372	0.81	+3.1
2,440,181	+		Synpcc7942_2372	0.85	-0.7