Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1939

Experiment: Nalidixic 0.0078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0078125 mg/ml
2,011,394	+	arsB	Synpcc7942_1938	0.17	+5.0
2,011,397	-	arsB	Synpcc7942_1938	0.17	-1.3
2,011,399	-	arsB	Synpcc7942_1938	0.17	+0.8
2,011,407	+	arsB	Synpcc7942_1938	0.18	-0.7
2,011,421	-	arsB	Synpcc7942_1938	0.19	+1.3
2,011,425	-	arsB	Synpcc7942_1938	0.20	-0.3
2,011,448	+	arsB	Synpcc7942_1938	0.22	+1.1
2,011,512	+	arsB	Synpcc7942_1938	0.28	+1.5
2,011,512	-	arsB	Synpcc7942_1938	0.28	+0.3
2,011,541	-	arsB	Synpcc7942_1938	0.31	-1.1
2,011,558	-	arsB	Synpcc7942_1938	0.32	+1.5
2,011,571	-	arsB	Synpcc7942_1938	0.34	-1.3
2,011,611	+	arsB	Synpcc7942_1938	0.37	-1.3
2,011,668	+	arsB	Synpcc7942_1938	0.43	+5.1
2,011,676	-	arsB	Synpcc7942_1938	0.44	+1.2
2,011,681	+	arsB	Synpcc7942_1938	0.44	+1.5
2,011,686	+	arsB	Synpcc7942_1938	0.44	+2.5
2,011,686	+	arsB	Synpcc7942_1938	0.44	-1.9
2,011,691	+	arsB	Synpcc7942_1938	0.45	-0.9
2,011,696	+	arsB	Synpcc7942_1938	0.45	-1.3
2,011,701	+	arsB	Synpcc7942_1938	0.46	-1.3
2,011,704	-	arsB	Synpcc7942_1938	0.46	+2.9
2,011,716	+	arsB	Synpcc7942_1938	0.47	-0.3
2,011,722	+	arsB	Synpcc7942_1938	0.48	+1.3
2,011,724	-	arsB	Synpcc7942_1938	0.48	+2.0
2,011,745	-	arsB	Synpcc7942_1938	0.50	-0.3
2,011,772	+	arsB	Synpcc7942_1938	0.53	-0.3
2,011,773	-	arsB	Synpcc7942_1938	0.53	+2.6
2,011,790	+	arsB	Synpcc7942_1938	0.54	+1.3
2,011,790	-	arsB	Synpcc7942_1938	0.54	+1.9
2,011,798	+	arsB	Synpcc7942_1938	0.55	+2.9
2,011,798	-	arsB	Synpcc7942_1938	0.55	+1.9
2,011,809	-	arsB	Synpcc7942_1938	0.56	+2.3
2,011,821	-	arsB	Synpcc7942_1938	0.57	-1.3
2,011,856	+	arsB	Synpcc7942_1938	0.60	-0.3
2,011,858	-	arsB	Synpcc7942_1938	0.61	+0.7
2,011,873	+	arsB	Synpcc7942_1938	0.62	-0.3
2,011,873	+	arsB	Synpcc7942_1938	0.62	+2.7
2,011,873	+	arsB	Synpcc7942_1938	0.62	-0.3
2,011,878	+	arsB	Synpcc7942_1938	0.63	+1.4
2,011,881	-	arsB	Synpcc7942_1938	0.63	+0.2
2,011,881	-	arsB	Synpcc7942_1938	0.63	-1.3
2,011,886	-	arsB	Synpcc7942_1938	0.63	-0.3
2,011,896	-	arsB	Synpcc7942_1938	0.64	+3.5
2,011,918	+	arsB	Synpcc7942_1938	0.66	+2.1
2,011,918	+	arsB	Synpcc7942_1938	0.66	-1.3
2,011,926	-	arsB	Synpcc7942_1938	0.67	+0.3
2,011,958	-	arsB	Synpcc7942_1938	0.70	-0.3
2,011,962	-	arsB	Synpcc7942_1938	0.70	-0.3
2,011,964	+	arsB	Synpcc7942_1938	0.71	+0.9
2,011,964	+	arsB	Synpcc7942_1938	0.71	+0.7
2,011,972	+	arsB	Synpcc7942_1938	0.71	+0.7
2,011,985	-	arsB	Synpcc7942_1938	0.73	+3.5
2,011,985	-	arsB	Synpcc7942_1938	0.73	-0.3
2,012,128	-	arsB	Synpcc7942_1938	0.86	+1.1
2,012,188	+				+1.1
2,012,188	+				+1.1
2,012,188	+				-0.3
2,012,188	+				+1.4
2,012,196	-				+2.3
2,012,196	-				+5.2
2,012,196	-				+2.7
2,012,196	-				+2.9
2,012,196	-				+3.1
2,012,212	+				+2.7
2,012,212	+				-1.3
2,012,212	+				+2.5
2,012,220	-				+1.5
2,012,220	-				-0.3
2,012,220	-				-2.3
2,012,220	-				-0.3
2,012,220	-				+0.7
2,012,277	+				+2.8
2,012,278	-				+0.4
2,012,285	-				-1.3
2,012,289	+				-2.3
2,012,347	+				+1.6
2,012,347	+				-1.3
2,012,392	+				-1.9
2,012,405	+				+3.6
2,012,417	+				-0.3
2,012,425	-				+2.9
2,012,425	-				-1.3
2,012,425	-				+1.1
2,012,427	+				+2.5
2,012,427	+				-0.3
2,012,427	+				-1.5
2,012,435	-				+2.8
2,012,439	+				+0.7
2,012,439	+				-0.3
2,012,440	-				+2.5
2,012,457	-				+2.7
2,012,458	+				+0.7
2,012,459	+				-0.3
2,012,502	+	gap3	Synpcc7942_1939	0.14	+1.5
2,012,507	+	gap3	Synpcc7942_1939	0.14	-0.9
2,012,507	+	gap3	Synpcc7942_1939	0.14	-1.3
2,012,507	+	gap3	Synpcc7942_1939	0.14	+3.7
2,012,515	-	gap3	Synpcc7942_1939	0.15	-1.9
2,012,515	-	gap3	Synpcc7942_1939	0.15	-0.3
2,012,540	+	gap3	Synpcc7942_1939	0.18	-2.3
2,012,540	+	gap3	Synpcc7942_1939	0.18	+2.9
2,012,548	-	gap3	Synpcc7942_1939	0.18	-0.7
2,012,576	+	gap3	Synpcc7942_1939	0.21	+2.0
2,012,576	+	gap3	Synpcc7942_1939	0.21	-1.9
2,012,576	+	gap3	Synpcc7942_1939	0.21	+2.1
2,012,616	-	gap3	Synpcc7942_1939	0.25	-0.3
2,012,618	+	gap3	Synpcc7942_1939	0.25	+3.0
2,012,618	+	gap3	Synpcc7942_1939	0.25	-1.3
2,012,618	+	gap3	Synpcc7942_1939	0.25	+1.2
2,012,625	+	gap3	Synpcc7942_1939	0.26	+2.9
2,012,626	-	gap3	Synpcc7942_1939	0.26	+1.7
2,012,626	-	gap3	Synpcc7942_1939	0.26	+0.6
2,012,642	-	gap3	Synpcc7942_1939	0.28	+1.5
2,012,652	-	gap3	Synpcc7942_1939	0.29	+1.0
2,012,656	+	gap3	Synpcc7942_1939	0.29	-1.3
2,012,656	+	gap3	Synpcc7942_1939	0.29	+1.0
2,012,681	-	gap3	Synpcc7942_1939	0.32	+1.5
2,012,775	+	gap3	Synpcc7942_1939	0.41	+3.1
2,012,780	+	gap3	Synpcc7942_1939	0.42	+1.6
2,012,788	-	gap3	Synpcc7942_1939	0.42	+1.7
2,012,816	+	gap3	Synpcc7942_1939	0.45	+3.8
2,012,843	+	gap3	Synpcc7942_1939	0.48	+1.5
2,012,862	+	gap3	Synpcc7942_1939	0.50	+2.9
2,012,944	-	gap3	Synpcc7942_1939	0.58	+1.9
2,012,944	-	gap3	Synpcc7942_1939	0.58	-0.3
2,012,972	+				-0.3
2,012,995	-	gap3	Synpcc7942_1939	0.63	+3.6
2,013,042	+	gap3	Synpcc7942_1939	0.68	+0.1
2,013,050	-	gap3	Synpcc7942_1939	0.69	-0.3
2,013,072	-	gap3	Synpcc7942_1939	0.71	-2.9
2,013,072	-	gap3	Synpcc7942_1939	0.71	-1.3
2,013,083	+	gap3	Synpcc7942_1939	0.72	-1.1
2,013,122	-	gap3	Synpcc7942_1939	0.76	+2.6
2,013,136	+	gap3	Synpcc7942_1939	0.77	+1.0
2,013,136	+	gap3	Synpcc7942_1939	0.77	+5.2
2,013,144	-	gap3	Synpcc7942_1939	0.78	+0.7
2,013,156	-	gap3	Synpcc7942_1939	0.79	-0.3
2,013,223	-	gap3	Synpcc7942_1939	0.86	+2.0
2,013,245	-	gap3	Synpcc7942_1939	0.88	+1.1
2,013,247	+	gap3	Synpcc7942_1939	0.88	+2.1
2,013,247	+	gap3	Synpcc7942_1939	0.88	-3.1
2,013,247	+	gap3	Synpcc7942_1939	0.88	+0.9
2,013,255	-	gap3	Synpcc7942_1939	0.89	+0.8
2,013,255	-	gap3	Synpcc7942_1939	0.89	-0.3
2,013,272	-				+2.2
2,013,274	+				+2.1
2,013,274	+				+0.5
2,013,274	+				-0.9
2,013,282	-				+1.9
2,013,302	+				+1.5
2,013,308	+				-1.9
2,013,315	-				+1.9
2,013,316	-				-0.3
2,013,323	-				+4.3
2,013,352	-				-2.3
2,013,352	-				+0.9
2,013,366	-				+2.6
2,013,395	+				+2.0
2,013,398	-				+7.3
2,013,403	+				-3.1
2,013,409	+				+1.4
2,013,411	-				-1.4
2,013,460	+				+1.4
2,013,465	+				+4.3
2,013,473	-				+1.7
2,013,473	-				+3.1
2,013,508	+	pmt	Synpcc7942_1940	0.12	-0.3
2,013,537	-	pmt	Synpcc7942_1940	0.14	+2.0
2,013,595	+	pmt	Synpcc7942_1940	0.19	-0.9
2,013,599	+	pmt	Synpcc7942_1940	0.19	+0.5
2,013,605	+	pmt	Synpcc7942_1940	0.19	+1.5
2,013,607	-	pmt	Synpcc7942_1940	0.20	+2.7
2,013,636	-	pmt	Synpcc7942_1940	0.22	-0.7
2,013,638	+				-1.3
2,013,638	+	pmt	Synpcc7942_1940	0.22	+2.9
2,013,651	-	pmt	Synpcc7942_1940	0.23	-0.3
2,013,667	-	pmt	Synpcc7942_1940	0.24	-1.7
2,013,713	+	pmt	Synpcc7942_1940	0.28	-0.3
2,013,714	+	pmt	Synpcc7942_1940	0.28	+0.8
2,013,715	+	pmt	Synpcc7942_1940	0.28	+2.3
2,013,715	+	pmt	Synpcc7942_1940	0.28	+2.7
2,013,716	+	pmt	Synpcc7942_1940	0.28	-0.3
2,013,723	-	pmt	Synpcc7942_1940	0.29	+2.5
2,013,724	-	pmt	Synpcc7942_1940	0.29	+1.7
2,013,746	-	pmt	Synpcc7942_1940	0.31	+2.5
2,013,774	+	pmt	Synpcc7942_1940	0.33	+2.6
2,013,774	+	pmt	Synpcc7942_1940	0.33	+1.3
2,013,774	+	pmt	Synpcc7942_1940	0.33	+6.9
2,013,775	+	pmt	Synpcc7942_1940	0.33	+2.7
2,013,797	+	pmt	Synpcc7942_1940	0.35	-1.9
2,013,797	-	pmt	Synpcc7942_1940	0.35	+1.9
2,013,805	+	pmt	Synpcc7942_1940	0.35	-2.3
2,013,876	+				-0.3
2,013,899	+	pmt	Synpcc7942_1940	0.43	+2.4
2,013,909	+	pmt	Synpcc7942_1940	0.43	-0.1
2,013,918	-	pmt	Synpcc7942_1940	0.44	+1.9
2,013,922	+	pmt	Synpcc7942_1940	0.45	-0.3
2,013,922	+	pmt	Synpcc7942_1940	0.45	-1.3
2,013,922	+	pmt	Synpcc7942_1940	0.45	+0.3
2,013,929	-	pmt	Synpcc7942_1940	0.45	+2.7
2,013,930	-	pmt	Synpcc7942_1940	0.45	-3.9
2,014,010	-	pmt	Synpcc7942_1940	0.52	+3.9
2,014,019	-	pmt	Synpcc7942_1940	0.52	+2.0
2,014,033	+	pmt	Synpcc7942_1940	0.53	+1.9
2,014,033	+	pmt	Synpcc7942_1940	0.53	+2.9
2,014,116	+	pmt	Synpcc7942_1940	0.60	-1.3
2,014,132	-	pmt	Synpcc7942_1940	0.61	+4.3
2,014,155	+	pmt	Synpcc7942_1940	0.63	+3.0
2,014,166	+	pmt	Synpcc7942_1940	0.64	+1.5
2,014,198	+	pmt	Synpcc7942_1940	0.66	+3.1
2,014,232	-	pmt	Synpcc7942_1940	0.69	+0.8
2,014,232	-	pmt	Synpcc7942_1940	0.69	-1.3
2,014,243	+	pmt	Synpcc7942_1940	0.70	-1.7
2,014,243	+	pmt	Synpcc7942_1940	0.70	+0.7
2,014,243	+	pmt	Synpcc7942_1940	0.70	-0.9
2,014,248	+	pmt	Synpcc7942_1940	0.70	+1.9
2,014,251	-	pmt	Synpcc7942_1940	0.71	-0.3
2,014,251	-	pmt	Synpcc7942_1940	0.71	-0.3
2,014,253	+	pmt	Synpcc7942_1940	0.71	-2.3
2,014,255	+	pmt	Synpcc7942_1940	0.71	+1.6
2,014,263	-	pmt	Synpcc7942_1940	0.72	+2.1
2,014,263	-	pmt	Synpcc7942_1940	0.72	-1.1
2,014,269	-	pmt	Synpcc7942_1940	0.72	-0.3
2,014,341	+	pmt	Synpcc7942_1940	0.78	+2.6
2,014,342	+	pmt	Synpcc7942_1940	0.78	+2.8
2,014,346	+	pmt	Synpcc7942_1940	0.78	-2.3
2,014,356	+	pmt	Synpcc7942_1940	0.79	+1.3