Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1817

Experiment: Nalidixic 0.0078125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0078125 mg/ml
1,890,430	-	ltnB	Synpcc7942_1816	0.68	-0.5
1,890,430	-	ltnB	Synpcc7942_1816	0.68	-0.3
1,890,430	-	ltnB	Synpcc7942_1816	0.68	+0.7
1,890,430	-	ltnB	Synpcc7942_1816	0.68	+1.8
1,890,515	-	ltnB	Synpcc7942_1816	0.71	+1.8
1,890,525	-	ltnB	Synpcc7942_1816	0.71	-0.3
1,890,567	+	ltnB	Synpcc7942_1816	0.72	+2.0
1,890,567	+	ltnB	Synpcc7942_1816	0.72	+2.4
1,890,570	-	ltnB	Synpcc7942_1816	0.72	+3.6
1,890,584	+	ltnB	Synpcc7942_1816	0.73	+0.3
1,890,597	-	ltnB	Synpcc7942_1816	0.73	-2.3
1,890,619	+	ltnB	Synpcc7942_1816	0.74	-0.3
1,890,686	+	ltnB	Synpcc7942_1816	0.76	-2.3
1,890,686	+	ltnB	Synpcc7942_1816	0.76	+1.5
1,890,694	-	ltnB	Synpcc7942_1816	0.77	+3.6
1,890,705	-	ltnB	Synpcc7942_1816	0.77	-1.3
1,890,736	+	ltnB	Synpcc7942_1816	0.78	+2.5
1,890,740	+	ltnB	Synpcc7942_1816	0.78	-0.3
1,890,768	-	ltnB	Synpcc7942_1816	0.79	+3.2
1,890,790	+	ltnB	Synpcc7942_1816	0.80	+2.1
1,890,812	+	ltnB	Synpcc7942_1816	0.81	-0.3
1,890,812	+	ltnB	Synpcc7942_1816	0.81	+2.7
1,890,817	+	ltnB	Synpcc7942_1816	0.81	+3.3
1,890,820	-	ltnB	Synpcc7942_1816	0.81	-0.6
1,890,832	-	ltnB	Synpcc7942_1816	0.81	+2.9
1,890,835	+	ltnB	Synpcc7942_1816	0.81	+2.3
1,890,840	+	ltnB	Synpcc7942_1816	0.82	+3.1
1,890,842	+	ltnB	Synpcc7942_1816	0.82	-2.3
1,890,842	+	ltnB	Synpcc7942_1816	0.82	+0.3
1,890,843	-	ltnB	Synpcc7942_1816	0.82	+2.9
1,890,843	-	ltnB	Synpcc7942_1816	0.82	+1.4
1,890,876	+	ltnB	Synpcc7942_1816	0.83	+2.0
1,890,885	+	ltnB	Synpcc7942_1816	0.83	+2.5
1,890,899	+	ltnB	Synpcc7942_1816	0.84	+3.0
1,890,968	+	ltnB	Synpcc7942_1816	0.86	+3.4
1,890,970	+	ltnB	Synpcc7942_1816	0.86	+0.5
1,890,976	+	ltnB	Synpcc7942_1816	0.86	+0.4
1,890,984	+	ltnB	Synpcc7942_1816	0.87	+1.5
1,890,984	-	ltnB	Synpcc7942_1816	0.87	-0.7
1,890,988	-	ltnB	Synpcc7942_1816	0.87	+1.6
1,890,998	+	ltnB	Synpcc7942_1816	0.87	-1.3
1,891,021	-	ltnB	Synpcc7942_1816	0.88	-0.3
1,891,035	-	ltnB	Synpcc7942_1816	0.88	+0.7
1,891,044	+	ltnB	Synpcc7942_1816	0.89	-0.3
1,891,053	+	ltnB	Synpcc7942_1816	0.89	+2.7
1,891,056	+	ltnB	Synpcc7942_1816	0.89	+0.7
1,891,056	+	ltnB	Synpcc7942_1816	0.89	+3.3
1,891,064	-	ltnB	Synpcc7942_1816	0.89	+0.3
1,891,076	+	ltnB	Synpcc7942_1816	0.90	+2.5
1,891,112	-				+3.7
1,891,117	-				+1.0
1,891,136	-				-0.3
1,891,148	+				+2.4
1,891,197	+				-1.9
1,891,205	-				+1.3
1,891,209	+				-2.3
1,891,211	+				-0.3
1,891,213	-				+1.0
1,891,213	-				+3.6
1,891,229	-				-0.3
1,891,236	-				+3.6
1,891,238	+				+1.0
1,891,242	+				+0.9
1,891,242	+				+3.5
1,891,257	-				+1.3
1,891,257	-				-0.3
1,891,268	-				+3.6
1,891,270	+				-0.6
1,891,273	-				-1.3
1,891,281	+				-2.3
1,891,289	-				+3.0
1,891,310	-				+2.2
1,891,326	+				-0.8
1,891,326	+				+0.2
1,891,326	+				-1.9
1,891,334	-				-0.3
1,891,334	-				-2.3
1,891,346	-				-1.3
1,891,387	-				+2.0
1,891,396	-				+3.5
1,891,397	+				+2.9
1,891,409	-				+1.9
1,891,443	-				-1.3
1,891,461	-	ltnA	Synpcc7942_1817	0.10	+0.3
1,891,461	-	ltnA	Synpcc7942_1817	0.10	-0.3
1,891,489	-	ltnA	Synpcc7942_1817	0.18	-0.8
1,891,499	-	ltnA	Synpcc7942_1817	0.21	+0.3
1,891,572	+	ltnA	Synpcc7942_1817	0.41	+0.7
1,891,580	-	ltnA	Synpcc7942_1817	0.43	+1.1
1,891,580	-	ltnA	Synpcc7942_1817	0.43	+1.8
1,891,582	+	ltnA	Synpcc7942_1817	0.43	-0.3
1,891,588	+	ltnA	Synpcc7942_1817	0.45	-0.3
1,891,590	-	ltnA	Synpcc7942_1817	0.46	-0.3
1,891,591	-	ltnA	Synpcc7942_1817	0.46	+2.3
1,891,627	+	ltnA	Synpcc7942_1817	0.56	+1.6
1,891,627	+	ltnA	Synpcc7942_1817	0.56	+0.7
1,891,635	-	ltnA	Synpcc7942_1817	0.58	-0.6
1,891,635	-	ltnA	Synpcc7942_1817	0.58	-2.6
1,891,685	+	ltnA	Synpcc7942_1817	0.72	+1.6
1,891,697	+	ltnA	Synpcc7942_1817	0.75	+0.8
1,891,705	-	ltnA	Synpcc7942_1817	0.77	-0.7
1,891,707	+	ltnA	Synpcc7942_1817	0.78	+1.2
1,891,785	-				+2.9
1,891,788	+				+1.8
1,891,788	+				+0.9
1,891,788	+				-0.3
1,891,788	+				+3.3
1,891,788	+				-1.9
1,891,796	-				+3.5
1,891,805	-				+2.3
1,891,856	+				+2.0
1,891,883	+				+0.7
1,891,889	+				-1.3
1,891,891	-				+3.4
1,892,142	+		Synpcc7942_1818	0.79	+4.9
1,892,147	+		Synpcc7942_1818	0.81	+3.3
1,892,147	+		Synpcc7942_1818	0.81	+3.0
1,892,150	-		Synpcc7942_1818	0.81	+1.6
1,892,150	-		Synpcc7942_1818	0.81	+1.0
1,892,150	-		Synpcc7942_1818	0.81	+3.3
1,892,150	-		Synpcc7942_1818	0.81	-0.0
1,892,154	-		Synpcc7942_1818	0.83	-0.9
1,892,160	-		Synpcc7942_1818	0.85	-1.0
1,892,196	-				+1.5
1,892,265	+				-2.3
1,892,273	-				-2.3
1,892,305	+				+2.1
1,892,333	+				-0.3
1,892,378	+				+1.5
1,892,386	-				+2.9
1,892,399	+				+1.4
1,892,457	-		Synpcc7942_1819	0.19	+0.7
1,892,479	+		Synpcc7942_1819	0.23	+0.9
1,892,484	+		Synpcc7942_1819	0.24	-0.3
1,892,492	-		Synpcc7942_1819	0.25	-0.1
1,892,492	-		Synpcc7942_1819	0.25	+3.4
1,892,523	+		Synpcc7942_1819	0.30	+1.4
1,892,523	+		Synpcc7942_1819	0.30	-2.6
1,892,523	+		Synpcc7942_1819	0.30	+1.4
1,892,531	-		Synpcc7942_1819	0.32	+2.3
1,892,531	-		Synpcc7942_1819	0.32	+0.3
1,892,531	-		Synpcc7942_1819	0.32	-0.3
1,892,554	+		Synpcc7942_1819	0.36	+0.7
1,892,573	+		Synpcc7942_1819	0.39	+2.4
1,892,633	+		Synpcc7942_1819	0.49	+1.0
1,892,641	+		Synpcc7942_1819	0.50	+7.9
1,892,651	+		Synpcc7942_1819	0.52	-0.3
1,892,664	-		Synpcc7942_1819	0.54	-0.3
1,892,668	+		Synpcc7942_1819	0.55	-0.3
1,892,702	+		Synpcc7942_1819	0.61	-1.3
1,892,710	-		Synpcc7942_1819	0.62	-0.3
1,892,755	+		Synpcc7942_1819	0.70	-0.3