Experiment: Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppsA and Synpcc7942_0782 are separated by 239 nucleotides Synpcc7942_0782 and hisG are separated by 32 nucleotides hisG and Synpcc7942_0784 are separated by 285 nucleotides
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Synpcc7942_0782: Synpcc7942_0782 - ATPase, at 776,760 to 778,556
_0782
Synpcc7942_0783: hisG - ATP phosphoribosyltransferase catalytic subunit, at 778,589 to 779,245
hisG
Synpcc7942_0784: Synpcc7942_0784 - hypothetical protein, at 779,531 to 779,848
_0784
Position (kb) 776
777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.762 kb on + strand, within ppsA at 775.770 kb on - strand, within ppsA at 775.791 kb on - strand, within ppsA at 775.797 kb on + strand, within ppsA at 775.853 kb on + strand, within ppsA at 775.868 kb on + strand, within ppsA at 775.869 kb on + strand, within ppsA at 775.877 kb on - strand, within ppsA at 775.886 kb on + strand, within ppsA at 775.893 kb on - strand, within ppsA at 775.916 kb on + strand, within ppsA at 775.916 kb on + strand, within ppsA at 775.929 kb on + strand, within ppsA at 775.934 kb on + strand, within ppsA at 775.988 kb on + strand, within ppsA at 776.025 kb on - strand, within ppsA at 776.030 kb on - strand, within ppsA at 776.109 kb on - strand, within ppsA at 776.118 kb on + strand, within ppsA at 776.148 kb on + strand, within ppsA at 776.148 kb on + strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.156 kb on - strand, within ppsA at 776.243 kb on - strand, within ppsA at 776.249 kb on - strand, within ppsA at 776.256 kb on - strand, within ppsA at 776.260 kb on + strand, within ppsA at 776.260 kb on + strand, within ppsA at 776.268 kb on - strand, within ppsA at 776.275 kb on + strand at 776.301 kb on - strand at 776.357 kb on + strand at 776.366 kb on + strand at 776.367 kb on - strand at 776.371 kb on + strand at 776.379 kb on + strand at 776.390 kb on + strand at 776.398 kb on - strand at 776.422 kb on - strand at 776.440 kb on - strand at 776.446 kb on - strand at 776.448 kb on + strand at 776.456 kb on - strand at 776.506 kb on - strand at 776.517 kb on + strand at 776.525 kb on - strand at 776.528 kb on - strand at 776.530 kb on - strand at 776.543 kb on + strand at 776.551 kb on - strand at 776.654 kb on - strand at 776.691 kb on - strand at 776.720 kb on + strand at 776.728 kb on - strand at 776.731 kb on + strand at 776.743 kb on + strand at 776.744 kb on - strand at 776.775 kb on - strand at 777.088 kb on - strand, within Synpcc7942_0782 at 777.109 kb on + strand, within Synpcc7942_0782 at 777.127 kb on + strand, within Synpcc7942_0782 at 777.156 kb on + strand, within Synpcc7942_0782 at 777.168 kb on + strand, within Synpcc7942_0782 at 777.171 kb on + strand, within Synpcc7942_0782 at 777.200 kb on + strand, within Synpcc7942_0782 at 777.202 kb on - strand, within Synpcc7942_0782 at 777.248 kb on + strand, within Synpcc7942_0782 at 777.253 kb on + strand, within Synpcc7942_0782 at 777.351 kb on - strand, within Synpcc7942_0782 at 777.389 kb on + strand, within Synpcc7942_0782 at 777.528 kb on - strand, within Synpcc7942_0782 at 777.889 kb on - strand, within Synpcc7942_0782 at 777.953 kb on - strand, within Synpcc7942_0782 at 778.009 kb on - strand, within Synpcc7942_0782 at 778.012 kb on + strand, within Synpcc7942_0782 at 778.039 kb on + strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.047 kb on - strand, within Synpcc7942_0782 at 778.113 kb on - strand, within Synpcc7942_0782 at 778.133 kb on - strand, within Synpcc7942_0782 at 778.191 kb on + strand, within Synpcc7942_0782 at 778.198 kb on + strand, within Synpcc7942_0782 at 778.206 kb on - strand, within Synpcc7942_0782 at 778.272 kb on - strand, within Synpcc7942_0782 at 778.277 kb on - strand at 778.277 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.324 kb on - strand, within Synpcc7942_0782 at 778.326 kb on + strand, within Synpcc7942_0782 at 778.329 kb on - strand, within Synpcc7942_0782 at 778.332 kb on + strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.345 kb on - strand, within Synpcc7942_0782 at 778.364 kb on + strand, within Synpcc7942_0782 at 778.372 kb on - strand, within Synpcc7942_0782 at 778.378 kb on + strand at 778.386 kb on - strand at 778.391 kb on - strand at 778.391 kb on - strand at 778.429 kb on + strand at 778.437 kb on - strand at 778.449 kb on - strand at 778.480 kb on + strand at 778.501 kb on + strand at 778.501 kb on + strand at 778.509 kb on - strand at 778.545 kb on - strand at 778.547 kb on - strand at 778.573 kb on - strand at 778.575 kb on + strand at 778.575 kb on + strand at 778.580 kb on + strand at 778.583 kb on - strand at 778.583 kb on - strand at 778.610 kb on - strand at 778.612 kb on + strand at 778.622 kb on - strand at 779.280 kb on - strand at 779.284 kb on + strand at 779.297 kb on - strand at 779.307 kb on - strand at 779.312 kb on - strand at 779.314 kb on + strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.322 kb on - strand at 779.324 kb on + strand at 779.326 kb on + strand at 779.348 kb on - strand at 779.353 kb on - strand at 779.357 kb on + strand at 779.369 kb on + strand at 779.398 kb on - strand at 779.447 kb on + strand at 779.455 kb on - strand at 779.491 kb on + strand at 779.497 kb on - strand at 779.499 kb on - strand at 779.515 kb on - strand at 779.531 kb on + strand at 779.539 kb on - strand at 779.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0078125 mg/ml remove 775,762 + ppsA Synpcc7942_0781 0.70 +1.3 775,762 + ppsA Synpcc7942_0781 0.70 +1.2 775,762 + ppsA Synpcc7942_0781 0.70 -0.4 775,762 + ppsA Synpcc7942_0781 0.70 +1.1 775,770 - ppsA Synpcc7942_0781 0.70 +3.1 775,791 - ppsA Synpcc7942_0781 0.71 -0.4 775,797 + ppsA Synpcc7942_0781 0.71 +0.6 775,853 + ppsA Synpcc7942_0781 0.73 +3.2 775,868 + ppsA Synpcc7942_0781 0.74 +0.2 775,869 + ppsA Synpcc7942_0781 0.74 +1.4 775,877 - ppsA Synpcc7942_0781 0.74 +2.5 775,886 + ppsA Synpcc7942_0781 0.75 -1.4 775,893 - ppsA Synpcc7942_0781 0.75 +0.6 775,916 + ppsA Synpcc7942_0781 0.76 +1.5 775,916 + ppsA Synpcc7942_0781 0.76 -0.4 775,929 + ppsA Synpcc7942_0781 0.76 +1.8 775,934 + ppsA Synpcc7942_0781 0.77 +3.9 775,988 + ppsA Synpcc7942_0781 0.79 +1.2 776,025 - ppsA Synpcc7942_0781 0.80 -0.4 776,030 - ppsA Synpcc7942_0781 0.80 +1.2 776,109 - ppsA Synpcc7942_0781 0.84 +2.3 776,118 + ppsA Synpcc7942_0781 0.84 -0.4 776,148 + ppsA Synpcc7942_0781 0.85 +2.7 776,148 + ppsA Synpcc7942_0781 0.85 +2.8 776,156 - ppsA Synpcc7942_0781 0.85 +2.5 776,156 - ppsA Synpcc7942_0781 0.85 -0.4 776,156 - ppsA Synpcc7942_0781 0.85 -0.1 776,156 - ppsA Synpcc7942_0781 0.85 +1.9 776,156 - ppsA Synpcc7942_0781 0.85 +0.4 776,243 - ppsA Synpcc7942_0781 0.89 -1.4 776,249 - ppsA Synpcc7942_0781 0.89 +2.3 776,256 - ppsA Synpcc7942_0781 0.89 -0.4 776,260 + ppsA Synpcc7942_0781 0.90 +3.1 776,260 + ppsA Synpcc7942_0781 0.90 -0.4 776,268 - ppsA Synpcc7942_0781 0.90 +1.4 776,275 + +0.1 776,301 - +1.1 776,357 + +1.6 776,366 + +2.4 776,367 - +0.9 776,371 + -1.4 776,379 + +1.4 776,390 + -2.0 776,398 - +0.6 776,422 - +3.0 776,440 - +1.2 776,446 - +0.7 776,448 + +2.4 776,456 - +2.8 776,506 - +1.3 776,517 + +0.2 776,525 - -2.0 776,528 - -0.4 776,530 - +2.4 776,543 + -2.0 776,551 - +1.6 776,654 - +0.3 776,691 - -0.7 776,720 + +3.3 776,728 - +1.5 776,731 + -0.4 776,743 + +0.6 776,744 - +2.1 776,775 - -0.9 777,088 - Synpcc7942_0782 0.18 -1.4 777,109 + Synpcc7942_0782 0.19 -1.4 777,127 + Synpcc7942_0782 0.20 -0.8 777,156 + Synpcc7942_0782 0.22 -0.4 777,168 + Synpcc7942_0782 0.23 -0.4 777,171 + Synpcc7942_0782 0.23 -0.4 777,200 + Synpcc7942_0782 0.24 +0.9 777,202 - Synpcc7942_0782 0.25 +2.1 777,248 + Synpcc7942_0782 0.27 -3.4 777,253 + Synpcc7942_0782 0.27 +1.7 777,351 - Synpcc7942_0782 0.33 -2.0 777,389 + Synpcc7942_0782 0.35 +1.4 777,528 - Synpcc7942_0782 0.43 -1.4 777,889 - Synpcc7942_0782 0.63 +1.4 777,953 - Synpcc7942_0782 0.66 +1.7 778,009 - Synpcc7942_0782 0.70 -3.4 778,012 + Synpcc7942_0782 0.70 +1.2 778,039 + Synpcc7942_0782 0.71 -1.4 778,047 - Synpcc7942_0782 0.72 +0.0 778,047 - Synpcc7942_0782 0.72 +0.4 778,113 - Synpcc7942_0782 0.75 -1.4 778,133 - Synpcc7942_0782 0.76 +0.9 778,191 + Synpcc7942_0782 0.80 +0.6 778,198 + Synpcc7942_0782 0.80 +3.0 778,206 - Synpcc7942_0782 0.80 +0.6 778,272 - Synpcc7942_0782 0.84 -1.4 778,277 - +0.6 778,277 - Synpcc7942_0782 0.84 +4.2 778,324 - Synpcc7942_0782 0.87 -1.4 778,324 - Synpcc7942_0782 0.87 +1.4 778,324 - Synpcc7942_0782 0.87 -0.4 778,324 - Synpcc7942_0782 0.87 -1.4 778,326 + Synpcc7942_0782 0.87 +3.1 778,329 - Synpcc7942_0782 0.87 -1.4 778,332 + Synpcc7942_0782 0.87 -2.0 778,345 - Synpcc7942_0782 0.88 -1.4 778,345 - Synpcc7942_0782 0.88 +3.1 778,364 + Synpcc7942_0782 0.89 -0.1 778,372 - Synpcc7942_0782 0.90 -0.4 778,378 + -0.4 778,386 - -0.4 778,391 - +0.6 778,391 - -2.0 778,429 + +0.6 778,437 - +1.2 778,449 - -0.4 778,480 + +0.6 778,501 + +0.6 778,501 + +2.0 778,509 - -0.6 778,545 - -1.4 778,547 - -0.4 778,573 - -3.6 778,575 + +2.4 778,575 + +0.6 778,580 + -0.4 778,583 - +0.2 778,583 - +1.6 778,610 - -0.4 778,612 + +2.2 778,622 - +1.8 779,280 - +1.5 779,284 + -0.6 779,297 - -0.1 779,307 - +2.0 779,312 - +1.4 779,314 + +1.4 779,322 - +3.5 779,322 - +0.5 779,322 - -0.4 779,324 + +1.7 779,326 + -0.4 779,348 - +3.1 779,353 - +1.3 779,357 + +2.3 779,369 + -1.4 779,398 - -2.4 779,447 + -0.8 779,455 - -1.4 779,491 + +2.8 779,497 - -0.4 779,499 - +2.1 779,515 - +0.4 779,531 + -0.4 779,539 - -0.4 779,555 + +1.9
Or see this region's nucleotide sequence